PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676747494
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 1359aa    MW: 151567 Da    PI: 7.2467
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676747494genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52.1e-12436481454
                HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  Av YI++L
  676747494 436 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAVSYINEL 481
                799***********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.3E-5049237IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.326432481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-18435502IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.91E-14435486No hitNo description
Gene3DG3DSA:4.10.280.101.7E-17436495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-10436481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-16438487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.10.630.102.7E-1226051084IPR001128Cytochrome P450
SuperFamilySSF482641.83E-1206111084IPR001128Cytochrome P450
PfamPF000672.0E-906111059IPR001128Cytochrome P450
PRINTSPR004632.6E-33638657IPR002401Cytochrome P450, E-class, group I
PRINTSPR004632.6E-33662683IPR002401Cytochrome P450, E-class, group I
PRINTSPR004632.6E-33877894IPR002401Cytochrome P450, E-class, group I
PRINTSPR003859.7E-6888905IPR001128Cytochrome P450
PRINTSPR004632.6E-33897923IPR002401Cytochrome P450, E-class, group I
PRINTSPR004632.6E-33940958IPR002401Cytochrome P450, E-class, group I
PRINTSPR003859.7E-6941952IPR001128Cytochrome P450
PRINTSPR004632.6E-339811005IPR002401Cytochrome P450, E-class, group I
PRINTSPR004632.6E-3310221032IPR002401Cytochrome P450, E-class, group I
PRINTSPR003859.7E-610231032IPR001128Cytochrome P450
PROSITE patternPS00086010251034IPR017972Cytochrome P450, conserved site
PRINTSPR004632.6E-3310321055IPR002401Cytochrome P450, E-class, group I
HamapMF_01224_B32.60712021358IPR023046Molybdenum cofactor biosynthesis C, bacterial-type
Gene3DG3DSA:3.30.70.6403.9E-6312031357IPR002820Molybdopterin cofactor biosynthesis C (MoaC) domain
TIGRFAMsTIGR005813.9E-5312041352IPR023045Molybdenum cofactor biosynthesis C
SuperFamilySSF550401.12E-5412111355IPR002820Molybdopterin cofactor biosynthesis C (MoaC) domain
PfamPF019675.1E-5112151350IPR002820Molybdopterin cofactor biosynthesis C (MoaC) domain
CDDcd014202.31E-7612151354No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006777Biological ProcessMo-molybdopterin cofactor biosynthetic process
GO:0055114Biological Processoxidation-reduction process
GO:0005506Molecular Functioniron ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037Molecular Functionheme binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1359 aa     Download sequence    Send to blast
MNIGGGVVWN EDDKAIVASL LGKRALDYLL SNSVPNANLL MTVGSDDNLQ NKLSDLVERP  60
NADNFSWNYA IFWQVSRSKA GDLVLCWGDG SCREPKEGEK SEIVRILSMG REEETHQTMR  120
KRVLQKLHAL FGGLEEDNCA LGLDRVTDTE MFLLASMYFS FPRGEGGPGK CFDSGKPVWL  180
SDVVNSGSDY CVRSFLAKSA GIQTVVLVPT DIGVVELGST RCLPESEDSI LSIRSSFSSS  240
LPPQVRVVTA AALPVVVADK IDDNRAVHSS SKIFGKDLHN SGFLHHQQQP QQHRQFREKL  300
TVRKMDDRVP KRVDAYPNNG SRYMFSNPST TTTTSNTLLS PTWIQPEMYT RTNSVKEVPS  360
TEDFKFRPLQ QSSQRLLPPA QMQIDFSGAS SRASENNSDG EGGAEWAEVV GGDESGNNRP  420
RKRGRRPANG RAEALNHVEA ERQRREKLNQ RFYALRSVVP NISKMDKASL LGDAVSYINE  480
LHAKLKVMEA ERERLGYSSN PPISLEPEVN VQTAGEDVTV RVHCSLDSHP ASRIFHAFEE  540
AKVEVINSKL EVPQDLVLHT FVIKSEELTK EKLISAFSRE QSSSVQSRTS SEELKKVFVA  600
QALASKAQKL PPGPPRWPIL GNLLQLGPLP HRDMAALCDK YGPLVYLRLG NIDAITTNDP  660
DTIREILFRQ DDVFASRPKT LAAVHLAYGC GDVALAPMGP HWKRMRRICM EHLLTTKRLE  720
SFAAQRAEEA RYLIRDVYER TEYGKPINLR EVLGAFSMNN VTRMLLGKQF FGPGSVVGPK  780
EAQEFMHITH KLFWLLGVIY LGDYLPFWRW VDPYGCEKEM RDVEKRVDKF HTKIIDEHRR  840
AKREKEDNDN NNGDMDFVDV LLSLPGENGK EHMEDVEIKA LIQDMIAAAT DTSAVTNEWA  900
MAEVIKQPRV MCKIQEELDN VVGSNRMVDE SDLVHLNYLR CVVRETFRMH PAGPFLIPHE  960
SVRPTTINGY YIPAKTRVFI NTHGLGRNTK IWDDIDEFRP ERHWPVDGSG RVEISHGPDF  1020
KILPFSAGKR KCPGAPLGVT MVLMALARLF HCFDWTSPEN IDTVEVYGMT MPKAKPLWAI  1080
AKPRLAAHLY TYSVLLLLCR CNKMFSTLRH AVFLRRFPAV ISPAKRAFSS KISDEIDPRI  1140
LNELNQEMQS IFGAEPSSPD GFSGTTTMDY SELKSKIESL ESTNPETSMQ YGKPANVACD  1200
MSKLTHVGVS GEAQMVDVSS KDNTKRTALA SCKVILGKTV FDLVLANQMG KGDVLGVAKI  1260
AGINGAKKTS SLIPLCHNIA LTHVRVDLRL NPEDFSVDIE GEASCTGKTG VEMEALTAVS  1320
VAGLTVYDMC KAASKDISIT DVRLERKTGG KSGYWSRGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ylw_A1e-77606108024490Ferruginol synthase
5ym3_A1e-77606108024490Ferruginol synthase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676747494
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533310.0AK353331.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-P08.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1016822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein