PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

WRKY

Protein Properties

Length: 311aa MW: 35019.6 Da PI: 6.3925

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676747156	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	88.7	4.9e-28	120	181	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK++ g++fpr+YYrCt++ gC+++k+v+rs+e+p ++ei+Y+g H ++ 676747156 120 LDDGFSWRKYGQKDILGAKFPRGYYRCTYRksqGCEATKQVQRSDENPMLFEIIYRGLHSCS 181 59*************************98889***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.4E-26	118	182	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-24	119	182	IPR003657	WRKY domain
PROSITE profile	PS50811	21.345	120	179	IPR003657	WRKY domain
SMART	SM00774	2.1E-40	120	182	IPR003657	WRKY domain
Pfam	PF03106	7.1E-26	121	180	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009751	Biological Process	response to salicylic acid
GO:0010193	Biological Process	response to ozone
GO:0042542	Biological Process	response to hydrogen peroxide
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MERKNDGGEW EKMKKEISEL MTEGRDYAHQ LKSQLGSSSS QESREHLAKK ILESYHNSLT 60 IMNYPGELGQ VSPHSHGGGS PKSDDSDQEP HQIIKSSKKS MPRWTQQVRI TPGVGIDRTL 120 DDGFSWRKYG QKDILGAKFP RGYYRCTYRK SQGCEATKQV QRSDENPMLF EIIYRGLHSC 180 SQANVGSTIP VRVLGPNQTQ EHENLEQMKE TLDSGHRNDN HQSLLHQTLH YPLSSTPILE 240 SNNAMLQLRD QNIDFFGSTS LSSDLEANVN YDFLASHDIG SVSHSTSNSP SESPFESFDP 300 NNPFGGFGFY S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	6e-19	119	178	13	74	Disease resistance protein RRS1
5w3x_D	6e-19	119	178	13	74	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250\|UniProtKB:Q9SUP6}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00525	DAP	Transfer from AT5G24110	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676747156

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid (SA). {ECO:0000269\|PubMed:22268143}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430047	0.0	KF430047.1 Brassica rapa WRKY transcription factor 30 (WRKY30) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013596670.1	0.0	PREDICTED: probable WRKY transcription factor 30
Swissprot	Q9FL62	1e-154	WRK30_ARATH; Probable WRKY transcription factor 30
TrEMBL	A0A0D3DD66	0.0	A0A0D3DD66_BRAOL; Uncharacterized protein
STRING	Bo7g097170.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12595	19	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24110.1	1e-128	WRKY DNA-binding protein 30

Publications ? help Back to Top
Jiang W,Wu J,Zhang Y,Yin L,Lu J Isolation of a WRKY30 gene from Muscadinia rotundifolia (Michx) and validation of its function under biotic and abiotic stresses. Protoplasma, 2015. 252(5): p. 1361-74 [PMID:25643917] Kanofsky K,Bahlmann AK,Hehl R,Dong DX Combinatorial requirement of W- and WT-boxes in microbe-associated molecular pattern-responsive synthetic promoters. Plant Cell Rep., 2017. 36(6): p. 971-986 [PMID:28341984]