PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

GATA

Protein Properties

Length: 309aa MW: 33532.1 Da PI: 6.5606

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676746026	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	46.4	5.5e-15	215	251	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++Rrgp+g++tLCnaCGl++ +g+ 676746026 215 CTHCGISSkcTPMMRRGPSGPRTLCNACGLFWTTRGT 251 ****999*********************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00979	3.2E-14	76	111	IPR010399	Tify domain
PROSITE profile	PS51320	14.19	76	111	IPR010399	Tify domain
Pfam	PF06200	3.3E-12	78	110	IPR010399	Tify domain
PROSITE profile	PS51017	11.905	147	189	IPR010402	CCT domain
Pfam	PF06203	3.8E-14	147	189	IPR010402	CCT domain
PROSITE profile	PS50114	10.765	209	268	IPR000679	Zinc finger, GATA-type
SMART	SM00401	3.6E-13	209	262	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.85E-12	211	268	No hit	No description
Gene3D	G3DSA:3.30.50.10	2.2E-14	214	256	IPR013088	Zinc finger, NHR/GATA-type
PROSITE pattern	PS00344	0	215	242	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	2.6E-12	215	251	IPR000679	Zinc finger, GATA-type
CDD	cd00202	1.94E-16	215	265	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007623	Biological Process	circadian rhythm
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MFGHHSQPPE INPNQIGSSS ATAPEDHHVS ASASSGHIPY DDMDPDSIYA ASDLLPDGSH 60 LVPHPSEASD LLASRPPEGA NQLTISFRGQ VYVFDAVGHD KVDAVLSLLG GGSTELSSAP 120 QGMELPQQNH HHMPVVEFQN RYSHPQRAQS LDRFRKKRNA RCFEKKVRYG VRQEVALRMA 180 RNKGQFTSAK MTEGAYNSGT DQDSAQDDGR PEILCTHCGI SSKCTPMMRR GPSGPRTLCN 240 ACGLFWTTRG TLRDLSKKTE ENQMAIIKPV EGGSDADANN SNSEPPTVEE HPALVSLANG 300 DKSNLLGNH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00451	DAP	Transfer from AT4G24470	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676746026

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009138082.1	0.0	PREDICTED: GATA transcription factor 25
Refseq	XP_013739218.1	0.0	GATA transcription factor 25-like
Swissprot	Q9LRH6	1e-175	GAT25_ARATH; GATA transcription factor 25
TrEMBL	A0A078JAP6	0.0	A0A078JAP6_BRANA; BnaA01g35150D protein
STRING	Bo1g039000.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5006	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	1e-168	GATA-type zinc finger protein with TIFY domain

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]