PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676746008
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family WRKY
Protein Properties Length: 855aa    MW: 95794.8 Da    PI: 7.2178
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676746008genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.71.8e-31215272260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d+++++i+Y+g+H+h+k
  676746008 215 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITDIIYKGTHDHPK 272
                8****************************************.***************85 PP
2WRKY106.41.5e-33372430159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  676746008 372 LDDGYRWRKYGQKVVRGNPNPRSYYKCTAPGCPVRKHVERASHDPKAVITTYEGKHNHD 430
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.571209273IPR003657WRKY domain
SuperFamilySSF1182901.44E-24212273IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-26212273IPR003657WRKY domain
SMARTSM007748.5E-34214272IPR003657WRKY domain
PfamPF031064.2E-24215271IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-37357432IPR003657WRKY domain
SuperFamilySSF1182903.01E-29364432IPR003657WRKY domain
PROSITE profilePS5081138.629367432IPR003657WRKY domain
SMARTSM007743.1E-39372431IPR003657WRKY domain
PfamPF031067.8E-26373430IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 855 aa     Download sequence    Send to blast
MNPQVNSERK QYQQLDCSAT VDPTARHDSA GGGGGNGGGG ARYKLMSPAK LPISRSTDIT  60
IPPGLSPTSF LESPVFISNI KPEPSPTTGS LFKPRPVHVS STSYQGRAFH QDNSFTEQKS  120
SEFEFKPPAS NMVYAELDKH RSEPAVQFQG QGHGSSHSPS SISEAAASSS DLSRLTPPRQ  180
NTPTSSDIPA GSEQDESVQT SQNEPKGSSP SILADDGYNW RKYGQKHVKG SEFPRSYYKC  240
THPNCEVKKL FERSHDGQIT DIIYKGTHDH PKPQPGRRNS GGLGIPAQEE RVEKGVYNLS  300
QAIEQPGNLE VPPTTDDGVE VAVSNRNKDD QDDDDPFTKR RRLDGTLEIT PLVKPIREPR  360
VVVQTLSEVD ILDDGYRWRK YGQKVVRGNP NPRSYYKCTA PGCPVRKHVE RASHDPKAVI  420
TTYEGKHNHD VPTSKSSSNH DIQPRFRPDE TDTISLNLGV GISSDGPDHT SNERQHQNQQ  480
LINQTHPNGV GFRYINMICY FKVFLLLLNS ISSIEESQEQ DKDMIQIPGK TKICSYEQTV  540
HGGSLPYWVV HKRTIRACLI MFNPNESEPN VWPSAETACS LFDDFTALPE YVKKKKETTV  600
ESYIEEKTWK ARENLKKIQK KNMEYTTDQL MVQLSSSRKL NDLSLNEIYS LISFSKDAIM  660
HLRKMFNFVQ QPPLCDSPVY HEDDKVRKND EATKRNNIGN LGESQSYYLM DQWFFPSSKP  720
PNHPYQGSSS NGNPDLEMQP ICPPMLTFHG SITQPFQHKH NINNIPILTS NRNSNLEMEP  780
VCPPMLNLHG LAGSVTQPIQ HHHNINNAPM VAKNINPNLE MESNFPPMPT FPGLAGSVTQ  840
SFHHHQKHQQ YSISG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-37191432177Probable WRKY transcription factor 4
2lex_A3e-37191432177Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1338342KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676746008
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931330.0KM593133.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013741870.10.0probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A398APL70.0A0A398APL7_BRACM; Uncharacterized protein
STRINGBostr.7867s0486.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein