PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676745734
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 456aa    MW: 49719.4 Da    PI: 7.1971
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676745734genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.33.1e-09103125326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                ++lC+f+a  G C+yGd+Ck+ H+
  676745734 103 EKLCKFWAD-GNCPYGDKCKYLHC 125
                579******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.9062450IPR000571Zinc finger, CCCH-type
SMARTSM003560.0572649IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.798100127IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-6102126IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-7103125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-7104122IPR000571Zinc finger, CCCH-type
SuperFamilySSF509785.5E-40116447IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.3E-42123184IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003203.4E-5131170IPR001680WD40 repeat
PfamPF004002.1E-4134170IPR001680WD40 repeat
PROSITE profilePS5008213.082138179IPR001680WD40 repeat
PROSITE profilePS5029412.183138179IPR017986WD40-repeat-containing domain
PRINTSPR003202.1E-6157171IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780157171IPR019775WD40 repeat, conserved site
Gene3DG3DSA:2.130.10.102.3E-42221448IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201231268IPR001680WD40 repeat
PROSITE profilePS5029419.986238361IPR017986WD40-repeat-containing domain
SMARTSM003200.02275312IPR001680WD40 repeat
PfamPF004000.052280312IPR001680WD40 repeat
PROSITE profilePS5008211.945282321IPR001680WD40 repeat
PRINTSPR003202.1E-6299313IPR020472G-protein beta WD-40 repeat
SMARTSM003201.9E-4315352IPR001680WD40 repeat
PfamPF004000.003317351IPR001680WD40 repeat
PRINTSPR003202.1E-6339353IPR020472G-protein beta WD-40 repeat
SMARTSM00320250356406IPR001680WD40 repeat
SMARTSM003206.8409446IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MDLDMNGGNK RVFQRRGGST APKDSNQKVC FHWRAGRCNR YPCPFLHREL PPPGTFSGSS  60
TNKRVADESG FAGPSHRRGP GFSGGASNSW GRFGGNRTVT KTEKLCKFWA DGNCPYGDKC  120
KYLHCWSQGD GFSLLTQLDG HHKVVTGIAL PSGSDKLYTA SKDETVRIWD CASGQDLGEP  180
RDVPFWPLTL QTTPVYCTGV LNPGGEVGCM ISEGPWLLVG IPNLVKAWNI QNNLDLSLTG  240
PVGQVYSLVV GTDLLFAGTQ DGSILVWRYN TVTSCFDPAA SLTGHTLAVV SLYVGANRLY  300
SGSMDNSIKV WSLDNLQCIQ TLTEHTSVVM SLICWDQFLL SCSLDNTVKI WAATEGGNLE  360
VTYTHKEEYV QFLAFLGVLA LCGVHDAEAK PVLLCSCNDN SLHLYDLPSF TGRGKILSKQ  420
EIRSIQIGPG GIFFTGDGTG QVKVWKWSTE PTVIQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-191113905320Tako8
6g6n_A2e-191113905320Tako8
6g6n_B2e-191113905320Tako8
6g6n_C2e-191113905320Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676745734
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2520630.0AJ252063.1 Arabidopsis thaliana partial mRNA for zfwd1 protein (zfwd1 gene).
GenBankBT0261220.0BT026122.1 Arabidopsis thaliana.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283770.10.0zinc finger CCCH domain-containing protein 48
RefseqXP_023635451.10.0zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A1J3D2230.0A0A1J3D223_NOCCA; Zinc finger CCCH domain-containing protein 48
STRINGCagra.2248s0023.1.p0.0(Capsella grandiflora)
STRINGXP_006283770.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1