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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
676745726 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family |
MIKC_MADS |
Protein Properties |
Length: 219aa MW: 25511.7 Da PI: 9.2607 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
676745726 | genome | VEGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 89.6 | 1.6e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien + rqv+fskRr+g+lKKA+ELSvLCda+va i+fs++g+lye++s
676745726 9 KRIENVTSRQVSFSKRRKGLLKKAHELSVLCDAQVAAIVFSQKGRLYEFAS 59
79***********************************************86 PP
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2 | K-box | 57.8 | 4.9e-20 | 86 | 177 | 12 | 100 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk...kekelqeenkaLrkklee 100
++l++e+a + ++ie Lq R+l+G+dL+s+s++eL+++ +++eksl+ +Rs+K++l ++ie+l+ keke+ +e +Lr+++ee
676745726 86 LYVQQLKNEMAIMMDKIELLQLHCRKLMGQDLDSCSVEELKEISTKIEKSLTIVRSRKDKLNEDKIEKLKAeiaKEKEVFNERSKLRQMFEE 177
56799****************999**********************************************54449*************9986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 219 aa
Download sequence Send
to blast |
MVRGKIEIKR IENVTSRQVS FSKRRKGLLK KAHELSVLCD AQVAAIVFSQ KGRLYEFASS 60 DMQKIMERCA IYRREYFGAE NLQKQLYVQQ LKNEMAIMMD KIELLQLHCR KLMGQDLDSC 120 SVEELKEIST KIEKSLTIVR SRKDKLNEDK IEKLKAEIAK EKEVFNERSK LRQMFEEQPL 180 WMQSRSIECE KSARSCDCGN INIPDVKTDL SIGLPESRV
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Functional Description ? help
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Source |
Description |
UniProt | MADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC189309 | 4e-63 | AC189309.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034C07, complete sequence. |