PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676745640
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB_related
Protein Properties Length: 294aa    MW: 31774.8 Da    PI: 8.9453
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676745640genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.45.7e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT eE+  l+ +v ++G+g W+tI +  +       R+  ++k++w++
        676745640  5 KQKWTSEEERALKAGVVKHGTGKWRTILSDPQfssalHSRSNVDLKDKWRN 55
                     79***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.414161IPR017930Myb domain
SuperFamilySSF466891.5E-15259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-14456IPR009057Homeodomain-like
SMARTSM007174.5E-7459IPR001005SANT/Myb domain
PfamPF002491.5E-8555IPR001005SANT/Myb domain
CDDcd116603.28E-20656No hitNo description
PROSITE profilePS5150414.696122190IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467858.16E-7125199IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.0E-4125193IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005260.0035125185IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGAPKQKWTS EEERALKAGV VKHGTGKWRT ILSDPQFSSA LHSRSNVDLK DKWRNISVTA  60
LYGSRKKAKL AHKKNHNQDD DNSTALTIVA LTNGDDAGQQ IDPPSPLAVT GEPSSSRDFQ  120
GLFASVDKIL LNGIATLERP LGPDVKTIMQ YVEDNPDTQP DMKRLVTSRL KHLISVGTIV  180
KIKHRYRITP SYEATRAAQS SRQPISEGNK ENSPNPEENG VPNLTKSQVD GEVAKIKGMT  240
IQEASAVAAK AVAEAEVAKA EALEAAREAA EAEAEAEAAQ LFAMAAMGAL RCRT
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. {ECO:0000269|PubMed:19102728}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676745640
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATU838393e-64U83839.1 Arabidopsis thaliana telomere repeat binding factor 3 (TRB3) mRNA, complete cds.
GenBankAY0588873e-64AY058887.1 Arabidopsis thaliana AT3g49850/T16K5_200 mRNA, complete cds.
GenBankAY0650693e-64AY065069.1 Arabidopsis thaliana AT3g49850/T16K5_200 mRNA, complete cds.
GenBankAY0790433e-64AY079043.1 Arabidopsis thaliana AT3g49850/T16K5_200 mRNA, complete cds.
GenBankAY5195423e-64AY519542.1 Arabidopsis thaliana MYB transcription factor (At3g49850) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024013637.11e-116telomere repeat-binding factor 3 isoform X1
RefseqXP_024013638.11e-116telomere repeat-binding factor 3 isoform X2
SwissprotQ9M2X31e-105TRB3_ARATH; Telomere repeat-binding factor 3
TrEMBLV4M0571e-115V4M057_EUTSA; Uncharacterized protein
STRINGXP_006404095.11e-115(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38092759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.13e-98telomere repeat binding factor 3
Publications ? help Back to Top
  1. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]