PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676745460
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 297aa    MW: 33452.2 Da    PI: 8.6704
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676745460genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.36e-1130651650
               HHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
     SRF-TF 16 RrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
               R  + lKKA+ELS LC+++v+++ f  +g+l ++++
  676745460 30 RDSTFLKKAYELSELCGVDVCILCFDREGNLvKTWP 65
               7789**********************9998637887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.00431466IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-1029101IPR002100Transcription factor, MADS-box
PfamPF003194.7E-93061IPR002100Transcription factor, MADS-box
PROSITE profilePS500668.93060IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MTKTTAKKCS SKLSVRKDPT IFKNPSNKGR DSTFLKKAYE LSELCGVDVC ILCFDREGNL  60
VKTWPEDEAK VRVMAERFSL LSVQERNKKS TKLSRFLNKK MMAEMKASLK ANDNSFSQKL  120
LPLDDSLKSR LRILQEKLQR PGHDHDQTVV ISADISPNVD HQPLLLHHPS TTEIIPANLP  180
STSSSSLINH PSNFSILLYN HDNGTFTQFP NSALPSFQQP AIPCNQDYGT NYLDLLLGGQ  240
GMVRNCNNSF DLLPPPPLMQ TQNPNFQQFD HQCVQTQQAI PYNQTPFFGI PPTMMLS
Cis-element ? help Back to Top
SourceLink
PlantRegMap676745460
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443457.11e-109PREDICTED: agamous-like MADS-box protein AGL93
TrEMBLA0A397YPC55e-75A0A397YPC5_BRACM; Uncharacterized protein
STRINGBra004071.1-P2e-75(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15639717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27070.12e-47AGAMOUS-like 53