PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676745426
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GATA
Protein Properties Length: 871aa    MW: 96634.4 Da    PI: 7.1124
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676745426genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.95.6e-182458135
       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
               C++Cg  kTp+WR gp g+ktLCnaCG+++++ +l
  676745426 24 CTHCGIEKTPQWRAGPLGPKTLCNACGVRFKSGRL 58
               *******************************9986 PP
2GATA22.41.7e-07522540119
       GATA   1 CsnCgttkTplWRrgpdgn 19 
                Cs+Cg+ kTp+WRrg++  
  676745426 522 CSHCGAEKTPQWRRGSEVA 540
                ***************9644 PP
3GATA56.92.7e-18788822135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  676745426 788 CTHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGRL 822
                *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.4381854IPR000679Zinc finger, GATA-type
SMARTSM004012.8E-141872IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-121979No hitNo description
Gene3DG3DSA:3.30.50.101.7E-132356IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.94E-122371No hitNo description
PfamPF003201.3E-152458IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402449IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.486516543IPR000679Zinc finger, GATA-type
SMARTSM004010.091516555IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-4520543IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577164.61E-13780843No hitNo description
PROSITE profilePS5011411.859782818IPR000679Zinc finger, GATA-type
SMARTSM004016.6E-15782836IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.7E-14786820IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.92E-13787835No hitNo description
PfamPF003204.2E-16788822IPR000679Zinc finger, GATA-type
PROSITE patternPS003440788813IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 871 aa     Download sequence    Send to blast
MESVESASML TICKNSGQTQ TQKCTHCGIE KTPQWRAGPL GPKTLCNACG VRFKSGRLLP  60
EYRPACSPTF SSELHSNYHR KVIEMRRKKE TSIDADEPGL NQPVQVEQTT AKRLVPEYRP  120
ACSPTFSKEL HSNYHRKVIE MRRKTSIDAD EPGSNQPVQV EEIESVELAL KNSVRKEKPV  180
TKGTDGFSIG DLLNFSNDDV LVEQGKRGVS VSLSDENTLN RSNIEDFESL LTSGLSVPMD  240
DLMGIEWLSE FVDDSLKPSY SAQSKKPNLL TGNLSRRRSV EHVKHGFYLK PHVPVGSRSK  300
QARTGASVWS LGSTVSSLSE LHSNHHHKVP EMRRKEEAVT DSAQNGDGFY FDDLLLDISN  360
DNAFVDVEVE YKDEVALMGQ LKRGASVSRD DETTLHRSNY VESLPTSDLS IPAMDLAERL  420
SDSLKPMKKR ILLTGNQRHH VAPAVNEDSC FKTTLPVELS VEHLGLPSLT DSPLSSTISS  480
LSSSGPSRAL LLSGAEPRQK EKKKSPSVGE NGGETQTQTR QCSHCGAEKT PQWRRGSEVA  540
VQCVCSNWSG QAKTKLVGFV RRMESVELAL NRNEKIVTDD DFSVDDLLDL SNDDVYVEDD  600
EPELIRKREL VSVSSNDDNT LHRNNQLLSP DCQDFGPLPT TDLSPPTDDV AELEWLSNFV  660
EEDSFTPYSV PTNKPVWLTG DRRHPVAPVH EDSCFKALLP VKFRTKRPRT GVSVWSLALP  720
PDSSSTSSSS SSSSISAPSS PLWLSGAEFL EEKKAVKRQK KPKKKALSSL KVWENGAQTQ  780
TQTQTRRCTH CGVQKTPQWR AGPLGAKTLC NACGVRFKSG RLLPEYRPAC SPTFSSDLHS  840
NHHRKVIEMR RKKETSTDAD EPGLNQVVQS F
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00404DAPTransfer from AT3G51080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676745426
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896277e-74AC189627.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS001M03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149294.11e-123PREDICTED: erythroid transcription factor isoform X1
RefseqXP_018515391.11e-123PREDICTED: erythroid transcription factor isoform X1
SwissprotQ9SD389e-97GATA6_ARATH; GATA transcription factor 6
TrEMBLM4FCR31e-121M4FCR3_BRARP; GATA transcription factor
STRINGBra038882.1-P1e-122(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.24e-73GATA transcription factor 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]