 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
676744758 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
| Family |
SBP |
| Protein Properties |
Length: 399aa MW: 44460.6 Da PI: 8.6089 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 676744758 | genome | VEGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 128.2 | 3.2e-40 | 147 | 222 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77
CqvegC+ dls+ak+yhr+h++Ce hsk p+v+vsg+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk++
676744758 147 CQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKPN 222
**************************************************************************86 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
| GO:0048653 | Biological Process | anther development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 399 aa
Download sequence Send
to blast |
MDWEIDGFDC TSLYSSSFVT VPYGGSSGSD LAHAFSKSSK STSISSSSAE VRTYNFTSEA 60
GESLPPGELV SSEEFPKGID TSPSLELSFG SGDPVLGLKL GKRTYFEDFW EVENTKGSSL 120
PVSLASSSAS PVKKSKSVSH KLQTPHCQVE GCNLDLSSAK DYHRKHRICE NHSKFPKVVV 180
SGVERRFCQQ CSRFHCLSEF DEKKRSCRRR LSDHNARRRK PNAGRTYDGK HQMDFVGNRF 240
ALIHPRSEEK FIWPNSKSVP SIGSMPQPAK TEMSTKLFTE HCGVGLLDPK MKTTRAELLS 300
KEKFTISSHM GTSQDLDGAL SLLSNSTPWV SYDQPRRFSL NHHPTNNLQP VAHRSVTQLN 360
SVSSYWQPDP PAVEGPTALY KNGVGQFNEN YYSLNQFYN
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 202 | 219 | KKRSCRRRLSDHNARRRK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK353181 | 0.0 | AK353181.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-38-E06. |
