PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676744700

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bZIP

Protein Properties

Length: 308aa MW: 33743.8 Da PI: 7.7062

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676744700	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	20.8	8.1e-07	184	229	18	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +rsR RK+++i+eLe++v L+a +L ++ +l ++ a+l e+ 676744700 184 QRSRVRKLQYIAELERRVSMLQAVEADLSVRVASLLQTRATLSLEN 229 79******************************99999999988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd14703	1.77E-15	178	223	No hit	No description
Gene3D	G3DSA:1.20.5.170	8.3E-6	184	236	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MSRPGQLPPR CPIPKKLSFN PVADTYYSSS SPIESCIGQY KSSTQDSTLE DQPAWLDELL 60 REKTDGMLTG GGPPLRRSAS DSVVLLGDIS DNFSGFNQSE DEESLTSEAC GELESACVYG 120 PNSPRARNNS SFSNNPIVSA FTDCVPQKAP QNSDDTVKGI HCPPLAEDAC GSMGVPNAKR 180 NPGQRSRVRK LQYIAELERR VSMLQAVEAD LSVRVASLLQ TRATLSLENS QMKQQMAILK 240 QDKLIREGEY QLLKKEAQRL KSGLGNFGSN NNNNRLVRSY SAGSNIGPRT ASSHLDWKLL 300 DLTKFNLN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676744700

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY099881	0.0	AY099881.1 Arabidopsis thaliana unknown protein (At5g04840) mRNA, complete cds.
GenBank	BT008710	0.0	BT008710.1 Arabidopsis thaliana At5g04840 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024012233.1	0.0	basic leucine zipper 6
TrEMBL	A0A1J3JJZ0	0.0	A0A1J3JJZ0_NOCCA; Basic leucine zipper 2
STRING	XP_006398936.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13642	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42380.2	2e-19	bZIP family protein