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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676744398 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | TCP | ||||||||
Protein Properties | Length: 266aa MW: 29719.9 Da PI: 7.3443 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 93.2 | 5.2e-29 | 42 | 120 | 3 | 66 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............s 66 g+kdrhsk++T +g+RdRR+Rlsa +a++++dLqd+LG+ ++sk i+WLl++a+ ++ l+ + + 676744398 42 GGKDRHSKVCTVRGLRDRRIRLSAMTAIQLYDLQDRLGLSQPSKVIDWLLEAAQNDVDSLPPLqfppgfhpsltagagE 120 68*************************************************************4444444444433330 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.496 | 43 | 101 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.0E-26 | 43 | 105 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MTDTRRTNSI GIKQEGDNHY QASSLSSMRQ NPRIVRVSRI FGGKDRHSKV CTVRGLRDRR 60 IRLSAMTAIQ LYDLQDRLGL SQPSKVIDWL LEAAQNDVDS LPPLQFPPGF HPSLTAGAGE 120 SFPKGILESF DLGSCSSRTD AIPRECLDLE KRKWVKPNES SNLEHGFDID HHFFSNSSQS 180 DKLYFPTSST YNNSSNSYHY NLGHLQHSLL DQSGNVTVAF SNNNLNPPVA ESVSSLFPRY 240 PSFLDGGQLQ LFSSNSNSSK QTDHVE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-17 | 48 | 102 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-17 | 48 | 102 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00497 | DAP | Transfer from AT5G08070 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676744398 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC241004 | 1e-131 | AC241004.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026J02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013680480.1 | 1e-138 | transcription factor TCP17-like | ||||
Swissprot | Q9LEZ9 | 1e-107 | TCP17_ARATH; Transcription factor TCP17 | ||||
TrEMBL | A0A291I340 | 1e-136 | A0A291I340_BRARR; TCP17a | ||||
TrEMBL | A0A397ZZ28 | 1e-136 | A0A397ZZ28_BRACM; Uncharacterized protein | ||||
STRING | Bo3g004670.1 | 1e-135 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3576 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08070.1 | 6e-98 | TCP domain protein 17 |
Publications ? help Back to Top | |||
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