PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676744298
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 324aa    MW: 36129.5 Da    PI: 6.8282
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676744298genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.8e-0798117626
                -SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                C+ f+  G C++Gd+C FaHg
  676744298  98 CPAFRN-GACHRGDTCEFAHG 117
                666666.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.9E-492118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.26792119IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-697117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-598120IPR000571Zinc finger, CCCH-type
SMARTSM0035622127150IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MLKSVNPMAF YELGEQQFPT LGYMVSKPGN AGAYEIDPPI PSVDDAIYGS DEFRMYAYKI  60
KRCPRTRSHD WTECPYAHRG EKATRRDPRR YSYCAVACPA FRNGACHRGD TCEFAHGVFE  120
YWLHPARYRT RACNAGNLCQ RKVCFFAHAP EQLRQSEGKH RCRYAYRPVR TTAGRGRNGD  180
GVGMRLDGDD FDTWQSPVKS GKSDLDINEE RVFKCWSGIS IVDDHYEPST YVPHPGGVFP  240
LADAAPPADH PDPPAGLLPP AGAAPPPDLF PNVPENVFPP QDPPYPPENF SIFNGVLADR  300
ANEVPAAVLS YTEDGKEKAT IKLT
Functional Description ? help Back to Top
Source Description
UniProtEmbryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676744298
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3507110.0AY350711.1 Sisymbrium irio clone BAC Sio11E11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444955.11e-161PREDICTED: zinc finger CCCH domain-containing protein 54
SwissprotO650361e-145C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBLQ6V5J01e-169Q6V5J0_SISIR; Zn-finger transcription factor
STRINGXP_006399233.11e-160(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115272126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.11e-147C3H family protein