PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676744238
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ARR-B
Protein Properties Length: 773aa    MW: 86251.4 Da    PI: 5.5764
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676744238genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like70.42.9e-22227280155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                k ++ Wt  LH+ F++a++++ G +kA+Pk+ile+m+v  Lt+e+v+SHLQkYR 
  676744238 227 KRKIMWTDYLHDLFLQAIRHI-GLDKAVPKKILEFMNVSYLTRENVASHLQKYRQ 280
                57899****************.********************************5 PP
2Response_reg73.58.4e-25181341110
                   EEEESSSHHHHHHHHHHHHHTTC.....EEEE..EESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
  Response_reg   1 vlivdDeplvrellrqalekegy.....eeva..eaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                   v++vdD+p++++++ ++lek++y     +e++  +++d++eal +l  +++++Dli++D  mpgm+Gl+l k+i++e  +lp+iv+++  +    +e
     676744238  18 VMVVDDDPVFLQIMSRMLEKSEYrdpstMEITviTVKDSKEALSTLkiQRNNIDLIVTDYYMPGMNGLQLKKQITQEFGELPVIVMSSDTN--KEQE 112
                   89*****************8887555553333359**********9445555************************99*********7766..7799 PP

                   HHHTTESEEEESS--HHHHHHH CS
  Response_reg  89 alkaGakdflsKpfdpeelvka 110
                    l  Ga+ f+ Kp++  +l+k 
     676744238 113 SLTCGAMCFIPKPIKATDLTKI 134
                   *****************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521726.4E-2516141IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.0E-2716139No hitNo description
SMARTSM004484.2E-2316135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011034.43917139IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.4E-2218135IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.89E-2519133No hitNo description
Gene3DG3DSA:1.10.10.601.1E-22225284IPR009057Homeodomain-like
SuperFamilySSF466892.69E-17225284IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-25227280IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 773 aa     Download sequence    Send to blast
MAFAQSFYNQ STILRTNVMV VDDDPVFLQI MSRMLEKSEY RDPSTMEITV ITVKDSKEAL  60
STLKIQRNNI DLIVTDYYMP GMNGLQLKKQ ITQEFGELPV IVMSSDTNKE QESLTCGAMC  120
FIPKPIKATD LTKIYQLAST YKRNGKAILW TEHNHKDIDV SIPQQIPLLP EQDNFMTTNK  180
KKKFSPRSDS NSLNESCVST GGSRKNRKRS NGGSGDDVES LSQPSKKRKI MWTDYLHDLF  240
LQAIRHIGLD KAVPKKILEF MNVSYLTREN VASHLQKYRQ FLRKVAEKGF FCSSMLPGSG  300
IDSIYPYPHI REPYYNNCTP SSWYDTSLNN RSFYTKTGYG LGQSRLLSNT TEPVRLNQMP  360
YNYMNRSSTY EPHRIGSNLT LPIKNNFGFS SQPSQNEGRR SFLEPTAMAN KTSQTSQVLG  420
FGNHGMSAIN GNGFNNNTLS SYGSLTSNQP GITSYASSTS TQPEMTGHGS LALNNQPRMS  480
SFDSSTSTQP GLTSHESLTP NKPGMNSFGS STSTQPGMSS HESLTPNQPR MSSFGILTSN  540
QLGMSSHGSL YPNQPGMRNY ESLTSNQLGS SSHGSSTPNH SGLNSYESVA HNAGLSYESL  600
TPHQPGSSNF SYGLESFLNN ERTADKPQPL SNATTQPNLG IPQLENLSLY ELDNTDELLC  660
DISNFQFDHN KQQDEAVSTT QFDLSESFPT EMNQIFSLEE DGDWTFVNIN QGHSNGETSN  720
NFALETNSQI LNMGHDHDQE QDVPDFVDWS LLNPEDLANE YDFMDSLFTS DVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-19226286464ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206228RKRSNGGSGDDVESLSQPSKKRK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676744238
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022549440.10.0putative two-component response regulator ARR21
SwissprotQ9LYP50.0ARR21_ARATH; Putative two-component response regulator ARR21
TrEMBLA0A3P6DDP20.0A0A3P6DDP2_BRACM; Uncharacterized protein
STRINGBra009284.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.10.0response regulator 21