PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676744086
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family WRKY
Protein Properties Length: 297aa    MW: 33754.4 Da    PI: 7.8012
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676744086genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1023.5e-32217275159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver a+dp++v++tYeg+H h+
  676744086 217 LDDGYRWRKYGQKVVKNTQHPRSYYRCTQDKCRVKKRVERLADDPRMVITTYEGRHLHS 275
                59*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-33202275IPR003657WRKY domain
SuperFamilySSF1182903.27E-28210276IPR003657WRKY domain
PROSITE profilePS5081129.356212277IPR003657WRKY domain
SMARTSM007749.9E-37217276IPR003657WRKY domain
PfamPF031064.0E-25218274IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGTINQGISL YDEPQNIINP NNTNHLGFFF SFPNHTLSSS SSSSPSSLAS PFLGHPSLNS  60
FLQNNSSSFV THPQDPINLM ANLPETLISI SSLSSSKQKD AHDGIVNLDH HRLSGSISSQ  120
RPSLNPWAWS CQAEYGYRKK NNHGNEVDVD DIDADVGDDV GINDDDDDQH HDIPRRHKHN  180
TPPLGVVSTL KMKKLKTRRK VREPRFCFKT LSDVDVLDDG YRWRKYGQKV VKNTQHPRSY  240
YRCTQDKCRV KKRVERLADD PRMVITTYEG RHLHSPSNHL DDDSLSSHHS PLSNFFW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-25209274974Probable WRKY transcription factor 4
2lex_A5e-25209274974Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676744086
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931400.0KM593140.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY32) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009121710.11e-173PREDICTED: probable WRKY transcription factor 13
RefseqXP_013665053.11e-173probable WRKY transcription factor 13
SwissprotQ9SVB71e-154WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A078HZ291e-171A0A078HZ29_BRANA; BnaA01g05500D protein
TrEMBLA0A398AKA21e-171A0A398AKA2_BRACM; Uncharacterized protein
TrEMBLM4D5V41e-171M4D5V4_BRARP; Uncharacterized protein
STRINGBra011861.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61062746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.11e-103WRKY DNA-binding protein 13