PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676743792
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB_related
Protein Properties Length: 592aa    MW: 66928.8 Da    PI: 4.3351
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676743792genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53e-08435476144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      r rW++++ el++++++++G++  + + + ++  Rt+ q+k+++
        676743792 435 RARWSKQDTELFYEGIREFGSN-LSMVQQLFP-DRTRQQIKLKF 476
                      569*****************99.*********.*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159637.5E-25428512No hitNo description
Gene3DG3DSA:1.10.10.601.8E-5432476IPR009057Homeodomain-like
SMARTSM007174.2E-7434482IPR001005SANT/Myb domain
CDDcd001677.60E-5437477No hitNo description
SuperFamilySSF466898.22E-9437486IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MDFDFDEQPS DAAPAARAGA KFKPKGRPQP KKKQVSVSTS QTTLTTDVAK GKLSATSEDP  60
VPVEASSVDV SVSETIVPDT GTINQTTIGT ISKQNVLGGV SVLRACTSVN LEGKRCDDGT  120
EAVPEFPDDP RIQDSAAFGD VVTRETDEVT DGQTETMQRE EEECYWNMEN LNIVQEERIT  180
SAYEEHTGKF QPKPRLLDTV IEEPESHYSV DYTTGANHSE FVVNVESRNE FNTNSTFYSE  240
LQEEEHNIPE IPRDTVPGGS EHEHHVVSPS TNNTAVGEEE NLGNTVEETR SGKESKKGKP  300
KRARKRKTNS EEEPNKSKEA PEKKKFKHSS RRQRNRTLEK ELLETPDEEI RFLPIRDMLR  360
LVEYREWMEK KEAKAAPVEP PPQESNTNAS DNQYYSQGFD AEDEFGLEEG ENQDYVVKPD  420
SPPVNYQTYM NKTPRARWSK QDTELFYEGI REFGSNLSMV QQLFPDRTRQ QIKLKFKLEE  480
RRFPLKLNDA LSTRSKQLVH YHTVIKKLQE EAAAAREGEE EEEAGEDAET TTDVPENEEP  540
AKSEETEGVA DVKESEGGDI ENGLRSDGVD EWDDGNEGDD DDDFWNSYKS EM
Cis-element ? help Back to Top
SourceLink
PlantRegMap676743792
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895451e-34AC189545.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004J18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024005819.10.0transcription factor TFIIIB component B'' homolog
TrEMBLV4P1I10.0V4P1I1_EUTSA; Uncharacterized protein
STRINGXP_006411718.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51542535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.11e-159MYB_related family protein