PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676743424
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 1267aa    MW: 144243 Da    PI: 6.9287
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676743424genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.18.4e-053623951755
                HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                N++f+ Lr ++P+ +       ++K +iL  +++Y+++L+
  676743424 362 NEKFSVLRAMVPTvN------EVDKESILNNTIKYLQELE 395
                9************55......8***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-3223186IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.578345394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-6351400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.001359399No hitNo description
SuperFamilySSF474591.44E-7360409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-7362405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS500048.621502603IPR000008C2 domain
SuperFamilySSF495626.86E-11534646IPR000008C2 domain
PfamPF001682.2E-7534611IPR000008C2 domain
Gene3DG3DSA:2.60.40.1503.8E-9534647IPR000008C2 domain
PROSITE profilePS51334113.3988891267IPR005512PRONE domain
PfamPF037591.7E-1738981263IPR005512PRONE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005089Molecular FunctionRho guanyl-nucleotide exchange factor activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1267 aa     Download sequence    Send to blast
MSLTRADGVE APGRRSKSEN TLLRKKLAVA LRSVQWSYAI FWSSSPTQSG VLEWGEGCYN  60
GDIKKRKKRY EAHYKYGLQR SNQLRELYLS MLEGDSNTTI GTTDDDVDGH SDDDDHHHHN  120
CNSPSMMLSP DDLSDEEWYY LVSMSYVFSP SQCLPGRALA TGETTWLCNA QYAENKLFSR  180
SLLARISEDH SLLQHIKSCL LETSKPDFSS NKFSAHQDSD HEKNQIKIKI SDRNSVLQES  240
HQIQFDTSDI MIDEDVHYKR TVSTVLKYAA DISKTNDKNS YHHPPDLVSP KSGSSFLRWK  300
RREQPDSVLL HERSNLQPLS QNVLRKILHD VPLMHSVDTK GMFPNKMFGL NQDDPSDGRK  360
ENEKFSVLRA MVPTVNEVDK ESILNNTIKY LQELEGRVEE LESCMGSVNF VERQRKTTES  420
LNGSVLIEET SGNYDDSTKI DGSSGETEQD TSIRYQTHVR VKLKDTEVVI EVKCSYRDYI  480
VADIMETLSK LHMDAFSVRS HTLNGLLTLN LKAKLRGAAV ASVGMTKREL RRVIGSPVYY  540
VLLQCGTKEY RSKMSKGDND NALWNQKFVF DFPMSQWKKL THIKVRIMDK ELFKDGGFVG  600
ETIIHLGGII AEGRDRGYIE VTPAPYNVVL DDDTFKGELK LGLRFTATDK LQIRKAWELK  660
IEANNNEEPM KPEKSQLHRL DQLLFSSDGS HYSLFSGHRF LSPERTSKGK RRGNWVHFNI  720
RFSFALNGLK LQIEVEGSFK DFTIKEQIPG FKFQILKSCL RKRIKSLKKK QTKNIKVERL  780
GGVLKKKMEN LLNLDENEDA GYHQSPRSID PNNQSASETP VYSTMSIDSF VYPRTCSEST  840
TSGFSDQIDE TNSFCSEASP CDWPVLTESK FDESSKCLTG IEMHTNENLE VQEISEPELE  900
TMKERFAKLL LGEDMSGSGK GVCTAVTISN AITNLYATVF GQNLRLEPLE TEKRALWKRE  960
MNCLLSVCDY IVEFIPRCQS LSNGTTVEVM ESRPRADIYI NLPALRKLDS MLMEALDSFQ  1020
NTEFWYAEEG SLSMKSARSA TGSFRKVIVQ RKEEKWWLPV PLVPSEGLSD KARKQLKNKR  1080
ESTNQIHKAA MAINSSILSE MEIPESYMAT LPKCGKSSVG DSIYRYMSGS GRFFPEQLLN  1140
CLNIASEHEA VQLADRVEAS MYTWRRKACL SNSKNSWNMV KDLMSTTERT DKNYVMAERA  1200
ETLLFCLKQR YPELSQTSLD ICKIQHNKDV GKAVLESYSR VLEGLAFNIV AWIDDVIYVD  1260
KTMSGSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ntx_A1e-11489312605355Emb|CAB41934.1
2ntx_B1e-11489312605355Emb|CAB41934.1
2nty_A1e-11489312605355Emb|CAB41934.1
2nty_B1e-11489312605355Emb|CAB41934.1
2wbl_A1e-11489312605355RHO OF PLANTS GUANINE NUCLEOTIDE EXCHANGE FACTOR 8
2wbl_B1e-11489312605355RHO OF PLANTS GUANINE NUCLEOTIDE EXCHANGE FACTOR 8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16367KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676743424
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0303850.0BT030385.1 Arabidopsis thaliana At4g00460 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018513296.10.0PREDICTED: transcription factor MYC1-like isoform X2
TrEMBLA0A3P5Y3440.0A0A3P5Y344_BRACM; Uncharacterized protein
STRINGBra037343.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117701832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.10.0bHLH family protein