PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676743368
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family WRKY
Protein Properties Length: 489aa    MW: 55025.8 Da    PI: 6.6021
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676743368genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY58.81e-18235272137
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37 
                ++Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+
  676743368 235 VNDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQ 272
                58***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-19220272IPR003657WRKY domain
SuperFamilySSF1182902.75E-17228272IPR003657WRKY domain
PROSITE profilePS5081119.061230272IPR003657WRKY domain
SMARTSM007741.2E-13235280IPR003657WRKY domain
PfamPF031062.4E-16236272IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MEEHSQDRRE IAFLHSGEFL QRDSTSKDHQ PNESSVEHDH KPSIKEVDFF AAKSQPYDLG  60
HMRPTIVGSS GFNDELVLVN SRLGTSSDDG DDKTKTQTIR LRMELERLHE ENHKLKYLLD  120
EISGSYNDLQ SRVLLARQTQ VEGLHQHEDI PEAISSHALE DRKPMAMNND IPATTLKRGS  180
PDDVDDRDLH RDSPKNPRLD QKKSTNHEEQ QNLHDQLPFR KARVSVRARS DATTVNDGCQ  240
WRKYGQKMAK GNPCPRAYYR CTMAVGCPVR KQNFPYTSSI ATLSASAPFP TITLDLTNPP  300
RPLQPPPPAH FLSQYGPAAF LTNANQTRSI NNNYPQLLLP NLSGPQALPR DMVDTVRAAI  360
AMDPNFTAAL AAAISNIIGG DACTSRHCRI PTSVATLYIT DCGEHDEIAD HILVSTINAE  420
LFGDTITLDW PDSIISFDLR FPFQIRLYPL PIFFRKNEMS RLVNSMRLQL DGRDLTPTIQ  480
SSRPTEKSI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00115ampDAPTransfer from AT4G01720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676743368
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300580.0KF430058.1 Brassica rapa WRKY transcription factor 47 (WRKY47) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609023.11e-166PREDICTED: probable WRKY transcription factor 47
RefseqXP_013722767.11e-166probable WRKY transcription factor 47
SwissprotQ9ZSI71e-159WRK47_ARATH; Probable WRKY transcription factor 47
TrEMBLA0A0D3DZW61e-165A0A0D3DZW6_BRAOL; Uncharacterized protein
STRINGBo9g004230.11e-166(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71562743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.11e-131WRKY family protein