PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676742766 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | WRKY | ||||||||
Protein Properties | Length: 403aa MW: 44925.7 Da PI: 7.9965 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90.1 | 1.8e-28 | 247 | 306 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y++C+ a +C+vkkkv+rs ed++v++ tYegeHnh+ 676742766 247 VKDGYQWRKYGQKVTRDNPSPRAYFKCACApSCSVKKKVQRSVEDQSVLVATYEGEHNHP 306 58**************************999****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.0E-27 | 242 | 308 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.773 | 242 | 308 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-24 | 243 | 308 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-31 | 247 | 307 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.0E-23 | 248 | 306 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0002238 | Biological Process | response to molecule of fungal origin | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009623 | Biological Process | response to parasitic fungus | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009685 | Biological Process | gibberellin metabolic process | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050691 | Biological Process | regulation of defense response to virus by host | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MANILTGGGR LVRWSRGNKD WTKYVCECGP EKDELSLKTK KSKIIPSSTI PEEKEKEEPN 60 KIDSYYESLN FLPQPTELPR IYIPTRIKIQ ADSSYIYILT SMDQYSSSLV DTSLDLTIGV 120 TRMRVEEDST TTALVDELNR VSAENKKLSE MLTLMCDNYN VLRKQLMEYV NKGNMAERDQ 180 ISPPKKRKSP ARDDAVSSGV IGGVSESSST DQDDQYLCKK QREETVVKEK VSRVYYKTEA 240 SDTTLVVKDG YQWRKYGQKV TRDNPSPRAY FKCACAPSCS VKKKVQRSVE DQSVLVATYE 300 GEHNHPMPSQ IDSNSGLNRY ITLGGPAAPA AAANGSSSLA EPMTTVDLTE SKKVTSPSRI 360 DFPEVQKLLV EQMASSLTKD PNFTAALAAA VTGRLYQQNQ ADK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-19 | 246 | 309 | 16 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-19 | 246 | 309 | 16 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00251 | DAP | Transfer from AT1G80840 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676742766 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU912406 | 0.0 | EU912406.1 Brassica napus WRKY40-1 transcription factor (WRKY40-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001302712.1 | 0.0 | probable WRKY transcription factor 40 | ||||
Refseq | XP_013587997.1 | 0.0 | PREDICTED: probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 0.0 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A397YSW2 | 0.0 | A0A397YSW2_BRACM; Uncharacterized protein | ||||
STRING | Bo6g124190.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2477 | 28 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 1e-169 | WRKY DNA-binding protein 40 |