PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676742362
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 87aa    MW: 9747.14 Da    PI: 9.9135
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676742362genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.75.4e-322474151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva++ifs++g+lyey++
  676742362 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYAN 74
               79***********************************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.1E-401675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.3891676IPR002100Transcription factor, MADS-box
CDDcd002651.20E-391779No hitNo description
SuperFamilySSF554551.57E-301778IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-331838IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PfamPF003193.8E-272572IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-333853IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-335374IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MEGGASNEVA ESSKKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
VIFSTRGRLY EYANNSFSEP QFSVGKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-211681176Myocyte-specific enhancer factor 2B
1tqe_Q2e-211681176Myocyte-specific enhancer factor 2B
1tqe_R2e-211681176Myocyte-specific enhancer factor 2B
1tqe_S2e-211681176Myocyte-specific enhancer factor 2B
6c9l_A2e-211681176Myocyte-specific enhancer factor 2B
6c9l_B2e-211681176Myocyte-specific enhancer factor 2B
6c9l_C2e-211681176Myocyte-specific enhancer factor 2B
6c9l_D2e-211681176Myocyte-specific enhancer factor 2B
6c9l_E2e-211681176Myocyte-specific enhancer factor 2B
6c9l_F2e-211681176Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676742362
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069311e-109AC006931.6 Arabidopsis thaliana chromosome 2 clone F7D19 map m551, complete sequence.
GenBankAY7276521e-109AY727652.1 Arabidopsis thaliana ecotype Li-3 SHATTERPROOF2 (SHP2) gene, complete cds.
GenBankAY7276531e-109AY727653.1 Arabidopsis thaliana ecotype Lu-1 SHATTERPROOF2 (SHP2) gene, complete cds.
GenBankAY7276541e-109AY727654.1 Arabidopsis thaliana ecotype Mt-0 SHATTERPROOF2 (SHP2) gene, complete cds.
GenBankAY7276551e-109AY727655.1 Arabidopsis thaliana ecotype PLA-0 SHATTERPROOF2 (SHP2) gene, complete cds.
GenBankAY7276561e-109AY727656.1 Arabidopsis thaliana ecotype Pog-0 SHATTERPROOF2 (SHP2) gene, complete cds.
GenBankAY7276571e-109AY727657.1 Arabidopsis thaliana ecotype Tsu-1 SHATTERPROOF2 (SHP2) gene, complete cds.
GenBankAY7276581e-109AY727658.1 Arabidopsis thaliana ecotype PHW-1 SHATTERPROOF2 (SHP2) gene, complete cds.
GenBankAY7276591e-109AY727659.1 Arabidopsis thaliana ecotype PHW-33 SHATTERPROOF2 (SHP2) gene, complete cds.
GenBankAY7276611e-109AY727661.1 Arabidopsis thaliana ecotype An-2 SHATTERPROOF2 (SHP2) gene, complete cds.
GenBankAY7276621e-109AY727662.1 Arabidopsis thaliana ecotype Br-0 SHATTERPROOF2 (SHP2) gene, complete cds.
GenBankAY7276631e-109AY727663.1 Arabidopsis thaliana ecotype Cha-0 SHATTERPROOF2 (SHP2) gene, complete cds.
GenBankAY7276641e-109AY727664.1 Arabidopsis thaliana ecotype Di-0 SHATTERPROOF2 (SHP2) gene, complete cds.
GenBankAY7276651e-109AY727665.1 Arabidopsis thaliana ecotype Est-1 SHATTERPROOF2 (SHP2) gene, complete cds.
GenBankAY7276661e-109AY727666.1 Arabidopsis thaliana ecotype Kl-5 SHATTERPROOF2 (SHP2) gene, complete cds.
GenBankAY7276671e-109AY727667.1 Arabidopsis thaliana ecotype Ko-2 SHATTERPROOF2 (SHP2) gene, complete cds.
GenBankAY7276681e-109AY727668.1 Arabidopsis thaliana ecotype Lip-0 SHATTERPROOF2 (SHP2) gene, complete cds.
GenBankAY7276691e-109AY727669.1 Arabidopsis thaliana ecotype 9481B SHATTERPROOF2 (SHP2) gene, complete cds.
GenBankBT0294531e-109BT029453.1 Arabidopsis thaliana At2g42830 mRNA, complete cds.
GenBankCP0026851e-109CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024016862.11e-47agamous-like MADS-box protein AGL5 isoform X2
SwissprotP293852e-48AGL5_ARATH; Agamous-like MADS-box protein AGL5
TrEMBLA0A178VRQ36e-47A0A178VRQ3_ARATH; Uncharacterized protein
TrEMBLA0A178VTG27e-47A0A178VTG2_ARATH; Uncharacterized protein
TrEMBLA0A1J3GA745e-46A0A1J3GA74_NOCCA; Agamous-like MADS-box protein AGL5
TrEMBLV4LR273e-46V4LR27_EUTSA; Uncharacterized protein
STRINGBostr.25993s0500.1.p7e-47(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42830.24e-38MIKC_MADS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Rathnakumar K, et al.
    Angiopoietin-2 mediates thrombin-induced monocyte adhesion and endothelial permeability.
    J. Thromb. Haemost., 2016. 14(8): p. 1655-67
    [PMID:27241812]
  4. Balanzà V,Roig-Villanova I,Di Marzo M,Masiero S,Colombo L
    Seed abscission and fruit dehiscence required for seed dispersal rely on similar genetic networks.
    Development, 2016. 143(18): p. 3372-81
    [PMID:27510967]
  5. Ehlers K, et al.
    The MADS Box Genes ABS, SHP1, and SHP2 Are Essential for the Coordination of Cell Divisions in Ovule and Seed Coat Development and for Endosperm Formation in Arabidopsis thaliana.
    PLoS ONE, 2016. 11(10): p. e0165075
    [PMID:27776173]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Ó'Maoiléidigh DS,Stewart D,Zheng B,Coupland G,Wellmer F
    Floral homeotic proteins modulate the genetic program for leaf development to suppress trichome formation in flowers.
    Development, 2018.
    [PMID:29361563]