PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676742332
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB_related
Protein Properties Length: 605aa    MW: 66773 Da    PI: 9.6411
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676742332genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.38.5e-141366148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                     + rW t+E++ll++av+++G+++W++++++++        +t+ +c++++++++
        676742332 13 KERWGTWEELLLACAVHRHGTESWSSVSAEIQkrspnlVSLTASSCRNKYLDLK 66
                     689***********************************99**********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.2E-71268IPR001005SANT/Myb domain
PROSITE profilePS500905.9931366IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.9E-61365IPR009057Homeodomain-like
SuperFamilySSF466892.56E-61369IPR009057Homeodomain-like
PfamPF002493.0E-131366IPR001005SANT/Myb domain
CDDcd001677.12E-71566No hitNo description
SMARTSM002972.7E-14240349IPR001487Bromodomain
SuperFamilySSF473702.62E-16243353IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.5E-14256354IPR001487Bromodomain
PfamPF004391.4E-12258334IPR001487Bromodomain
CDDcd043698.66E-15259344No hitNo description
PROSITE profilePS5001412.14267330IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MVKPENDESF PEKERWGTWE ELLLACAVHR HGTESWSSVS AEIQKRSPNL VSLTASSCRN  60
KYLDLKRRFT QEESVAEIST VPWLEELRKL RVDELRREVE QYDLSISCLQ SKVKRLEDER  120
EMKEIENSGV MEEKDAKADV ELVKESISPD PKENDSPGTG SVNVKGEEEM VKVTGEDSCR  180
GSCESVEKES AANSDRVEPG RRTELAESMV ESDRGEEECK ETSDVQSSAS LPRKGTPELD  240
NKDFPVESQP SICFVQILLS NPCGSHFSRR LQTQETPEYG EIIRQHVDFE IIRKQVEEGA  300
YKSSMSKLFR DLLLLINNAK VFYHNGSSEF KSAEQLHLLV KKQMTTALKR PREISPPKEM  360
SLELVTRKEA VAVSSKPVSV KPRMSVPLIA CRKRSSLAAK PLISSPSGAG KKTDQVVDDE  420
KPVSGKDETR GGKTSSTKKV AITNNVKNRD SSLNVDDNSK VPASSEVKNS TDEAKKGNKS  480
GSSKKKSAAS FLKRIKGGSS SDTVVETLKP RSGADSSTTG KGGTEQKKNN SNKADAKKRA  540
ATTGENQGNE KGSPVKKKNN GRVLKREAAP SPSSTPILAK RSREAVDTKT ASSPSSSRLK  600
KRVRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1597603RLKKRVR
Cis-element ? help Back to Top
SourceLink
PlantRegMap676742332
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013744975.10.0DNA repair protein complementing XP-C cells homolog isoform X2
RefseqXP_022574151.10.0DNA repair protein complementing XP-C cells homolog isoform X2
TrEMBLA0A397ZXF00.0A0A397ZXF0_BRACM; Uncharacterized protein
STRINGBra016893.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.10.0DNA-binding bromodomain-containing protein