PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676741410

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

FAR1

Protein Properties

Length: 759aa MW: 87701.2 Da PI: 7.9373

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676741410	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.6	1.6e-26	12	97	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY++YAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++ra+ ++gCka+++vk++ dgkw+v++++++HnHel p 676741410 12 FYKDYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGSKQQSDDA----INPRASPKIGCKASMHVKRRPDGKWYVYSFVKDHNHELLP 97 ***************************************99887....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-24	12	97	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.8E-26	211	303	IPR018289	MULE transposase domain
Pfam	PF04434	3.3E-9	489	523	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.583	489	525	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.4E-8	500	527	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 759 aa Download sequence Send to blast
MEFETHEDAY TFYKDYAKSV GFGTAKLSSR RSRASKEFID AKFSCIRYGS KQQSDDAINP 60 RASPKIGCKA SMHVKRRPDG KWYVYSFVKD HNHELLPEQA HFFRSHRITD PASSDSRLRR 120 KKNNPLADSK HLTAYHDLDF LDGYMRNQHD KGRRLVIDGG DAQILLEFLM RMQEENPRFF 180 YAVDFSEDHV LRNVFWVDAK GIDDYKSFND VVSFDTSYFV SKFKVPLVVF VGVNHHVQPV 240 LLGCGLIADE TVYTYVWLMQ SWLVAMGGST PKVMLTDQNS AIKAAVGAVL PETRHCYCLW 300 HVLDRLPRNL DYWSMWQDTF MKKFFKCIYR SWSEEEFDKR WLKLIDKFHL RDVQWMRSLY 360 DERRFWAPTF MRGVTFAGLS TRYRSESVNS MFDRYVQAET SLKDFLEGYG VMLEDRYEEE 420 AKADFDAWHE APELKSPSPF EKQMLLVYTH VIFRKFQLEV LGAAACHLTK ESEEGTTYSV 480 KDFEDDQKYL VDWDETKLDI YCSCRSFEYK GYLCRHAIVV LQMSGVFTIP INYVLQRWTN 540 AARNRHQISG NLELVQSNIR RFNDLCRRAI ILGEEGSLSQ ESYDVAMFAM KEAFKRCAVK 600 VNTIEHPARY EEAAVQPGDP VQAENQYGST SKQIGLEHNI HAGNASGQAE ARREKRSSLS 660 NTSKKPKTMK SITRPRMRNN NFSVHFVDPF SFVQHVTQSG TVGEGSQEGF QHGVGAARPF 720 QAGLAAQFHS TIPAVFQNVI TTEFHNIPST NMHQNNPPG

Sequence ? help Back to Top

Protein Sequence Length: 759 aa Download sequence Send to blast

MEFETHEDAY TFYKDYAKSV GFGTAKLSSR RSRASKEFID AKFSCIRYGS KQQSDDAINP  60
RASPKIGCKA SMHVKRRPDG KWYVYSFVKD HNHELLPEQA HFFRSHRITD PASSDSRLRR  120
KKNNPLADSK HLTAYHDLDF LDGYMRNQHD KGRRLVIDGG DAQILLEFLM RMQEENPRFF  180
YAVDFSEDHV LRNVFWVDAK GIDDYKSFND VVSFDTSYFV SKFKVPLVVF VGVNHHVQPV  240
LLGCGLIADE TVYTYVWLMQ SWLVAMGGST PKVMLTDQNS AIKAAVGAVL PETRHCYCLW  300
HVLDRLPRNL DYWSMWQDTF MKKFFKCIYR SWSEEEFDKR WLKLIDKFHL RDVQWMRSLY  360
DERRFWAPTF MRGVTFAGLS TRYRSESVNS MFDRYVQAET SLKDFLEGYG VMLEDRYEEE  420
AKADFDAWHE APELKSPSPF EKQMLLVYTH VIFRKFQLEV LGAAACHLTK ESEEGTTYSV  480
KDFEDDQKYL VDWDETKLDI YCSCRSFEYK GYLCRHAIVV LQMSGVFTIP INYVLQRWTN  540
AARNRHQISG NLELVQSNIR RFNDLCRRAI ILGEEGSLSQ ESYDVAMFAM KEAFKRCAVK  600
VNTIEHPARY EEAAVQPGDP VQAENQYGST SKQIGLEHNI HAGNASGQAE ARREKRSSLS  660
NTSKKPKTMK SITRPRMRNN NFSVHFVDPF SFVQHVTQSG TVGEGSQEGF QHGVGAARPF  720
QAGLAAQFHS TIPAVFQNVI TTEFHNIPST NMHQNNPPG

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676741410

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020890971.1	0.0	protein FAR1-RELATED SEQUENCE 4 isoform X1
Refseq	XP_020890972.1	0.0	protein FAR1-RELATED SEQUENCE 4 isoform X1
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A087HIV3	0.0	A0A087HIV3_ARAAL; Uncharacterized protein
STRING	Bostr.20129s0070.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]