PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676741354

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

SBP

Protein Properties

Length: 1063aa MW: 117455 Da PI: 8.5768

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676741354	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.8	4.2e-40	136	212	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv++C++dls ak+yhrrhkvCe+hska+++lv ++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ 676741354 136 CQVDNCKEDLSVAKDYHRRHKVCEIHSKATKALVGRQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTQP 212 **************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.1E-32	128	197	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.889	133	210	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.53E-37	134	215	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.9E-28	136	209	IPR004333	Transcription factor, SBP-box
CDD	cd00204	1.73E-7	820	954	No hit	No description
Gene3D	G3DSA:1.25.40.20	2.4E-5	864	968	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	4.26E-6	867	957	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1063 aa Download sequence Send to blast
MEEVGPQVAA PISVHHPIGR KRDLYYQMSN RQPYWLVPSQ PQQRNDWDPK DWVWDSRRFE 60 AKPVEAESRN GFDLNARSNS NDNNGGLSYE GEERRGLDLN LSSGFNAVEE TTVVARPNKR 120 VKSGSSGSGG GNYPKCQVDN CKEDLSVAKD YHRRHKVCEI HSKATKALVG RQMQRFCQQC 180 SRFHLLSEFD EGKRSCRRRL AGHNRRRRKT QPEEITSGAV GTGNSDNNVA NMDIMALLTA 240 LACAQGKNTK NDAQLNGSPA VPQREQLLQI LNKINALPLP MDLVSKLNNI GILARKNLDK 300 PSAMNPQNAV NGASSPSTMD LLAVLSTTLG SSAPEAIAFL SQGGFAKQDN KDKTKSTSSD 360 HATTTNSEKR TLEFPSFGGG ERSSSSNPSP SQDSDSRGQD TRSSLSLQLF TSSPEDESQP 420 TVASSGKYYS SASSNPVEDR SPSSSPVMQE LFPMQTSPET MRSNNCNSIA TPRNSCLPLE 480 LFGPSNRGAA ANPSYASSGS DYSPPSLNSD DQVCSLPHSH CKLKSCPSKA GLKLLSCVFK 540 QHRTGKIVFK LLGKDPSQLP GTLRTEICSW LSSIPSEMES YIRPGCVILS VYVAMPASAW 600 EQLEDNLLQR VSSLVQESEF WSNTRFLVNT GRQLASYKHG RIRLSKSWRT LNSPELIRVS 660 PVAVVAGEET TLVVRGRSLT NDGISFRCAH MGNYTSMEVN ETAHRSTKFD ELNVNRFKVK 720 SPSPGSLGRC FVEVENGFRS DSFPLIIANA TICKELNLLE DEFYPKDVTE EQTYNSDRPS 780 SREEVLCFLN ELGWLFQKKK RGTDIHGESD FSLPRFKFLL VCSVERDYCS LVRTLLDIMV 840 ERNLGKDGLM NKDCLDMLAE IQLLSRTVKR KNTKMAETLI QYFVNPIAKK FIFLPNIKGP 900 GDITPLHLAA STSGSDDMID VLTNDPQEIG LSSWNTLMDA SGQTPFSYAA MRNNHSYNTL 960 VARKLADKRN GQISLNIENG IDQIGVSKRI SSELKRSCNT CASVALKYQK KVSGSHRLFP 1020 TPIIHSMLAV ATVCVCVCVF MHAFPIVRQG SHFSWGGLDY GSV

Sequence ? help Back to Top

Protein Sequence Length: 1063 aa Download sequence Send to blast

MEEVGPQVAA PISVHHPIGR KRDLYYQMSN RQPYWLVPSQ PQQRNDWDPK DWVWDSRRFE  60
AKPVEAESRN GFDLNARSNS NDNNGGLSYE GEERRGLDLN LSSGFNAVEE TTVVARPNKR  120
VKSGSSGSGG GNYPKCQVDN CKEDLSVAKD YHRRHKVCEI HSKATKALVG RQMQRFCQQC  180
SRFHLLSEFD EGKRSCRRRL AGHNRRRRKT QPEEITSGAV GTGNSDNNVA NMDIMALLTA  240
LACAQGKNTK NDAQLNGSPA VPQREQLLQI LNKINALPLP MDLVSKLNNI GILARKNLDK  300
PSAMNPQNAV NGASSPSTMD LLAVLSTTLG SSAPEAIAFL SQGGFAKQDN KDKTKSTSSD  360
HATTTNSEKR TLEFPSFGGG ERSSSSNPSP SQDSDSRGQD TRSSLSLQLF TSSPEDESQP  420
TVASSGKYYS SASSNPVEDR SPSSSPVMQE LFPMQTSPET MRSNNCNSIA TPRNSCLPLE  480
LFGPSNRGAA ANPSYASSGS DYSPPSLNSD DQVCSLPHSH CKLKSCPSKA GLKLLSCVFK  540
QHRTGKIVFK LLGKDPSQLP GTLRTEICSW LSSIPSEMES YIRPGCVILS VYVAMPASAW  600
EQLEDNLLQR VSSLVQESEF WSNTRFLVNT GRQLASYKHG RIRLSKSWRT LNSPELIRVS  660
PVAVVAGEET TLVVRGRSLT NDGISFRCAH MGNYTSMEVN ETAHRSTKFD ELNVNRFKVK  720
SPSPGSLGRC FVEVENGFRS DSFPLIIANA TICKELNLLE DEFYPKDVTE EQTYNSDRPS  780
SREEVLCFLN ELGWLFQKKK RGTDIHGESD FSLPRFKFLL VCSVERDYCS LVRTLLDIMV  840
ERNLGKDGLM NKDCLDMLAE IQLLSRTVKR KNTKMAETLI QYFVNPIAKK FIFLPNIKGP  900
GDITPLHLAA STSGSDDMID VLTNDPQEIG LSSWNTLMDA SGQTPFSYAA MRNNHSYNTL  960
VARKLADKRN GQISLNIENG IDQIGVSKRI SSELKRSCNT CASVALKYQK KVSGSHRLFP  1020
TPIIHSMLAV ATVCVCVCVF MHAFPIVRQG SHFSWGGLDY GSV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	5e-30	124	209	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676741354

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006390174.1	0.0	squamosa promoter-binding-like protein 16
Refseq	XP_024006991.1	0.0	squamosa promoter-binding-like protein 16
Swissprot	Q700C2	0.0	SPL16_ARATH; Squamosa promoter-binding-like protein 16
TrEMBL	V4JQE9	0.0	V4JQE9_EUTSA; Uncharacterized protein
STRING	Bostr.20129s0096.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3999	25	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76580.1	0.0	SBP family protein