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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
676741272 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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| Family |
GRAS |
| Protein Properties |
Length: 405aa MW: 45488.4 Da PI: 5.8749 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 676741272 | genome | VEGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 444.3 | 8.1e-136 | 45 | 405 | 4 | 374 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
+L +cA+avs+++l +a++++ +ls ++s +g+p+qRl ay++e+L arla ++s++yk+l+++e + s e l+++ +++e++P++kf+++ aN aI
676741272 45 VLAACAKAVSEDNLLMARWCMGQLSGMVSISGEPIQRLGAYMLEGLVARLAATGSSIYKSLQSREPE---SYEFLSYVYFLHEICPYFKFGYMSANGAIA 141
799**************************************************************99...9***************************** PP
GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEala 203
ea++ eer+HiiDf+i+qG QW aL+qa+a+Rp+g+p++RiTg+g+ +l ++++rL+k+A++++vpf+fn+ v+++ ++e+e+L+v++gEal
676741272 142 EAMKDEERIHIIDFQIGQGSQWTALIQAFAARPRGAPNIRITGIGE-----GSNLVAVRKRLEKLAKKFDVPFKFNA-VSRSSCEVEVEDLDVRKGEALG 235
**********************************************.....889***********************.79999***************** PP
GRAS 204 VnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303
Vn++++lh+l+desvs++++rd++L++vkslsPkvv++veqe+++n+++Fl rfle+l+yy+a+f+s+++ lpr+++eri+vE+++l+r++vn++acega
676741272 236 VNFAYMLHHLPDESVSMDNHRDRLLRMVKSLSPKVVTLVEQECNTNTSPFLPRFLETLSYYTAMFESIDVMLPRNHKERINVEQHCLARDVVNIIACEGA 335
**************************************************************************************************** PP
GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
er+erhe l+kW++r+++aGF+p+pls+ + +++++ll+ ++ +gy +ee++g+l+lgW++r Lvs +aW+
676741272 336 ERIERHELLGKWKSRFSMAGFQPYPLSSVVSATIRALLKDYS-NGYGIEERDGALYLGWMGRILVSSCAWK 405
*****************************************9.9**************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 405 aa
Download sequence Send
to blast |
MLQPLPEIAE TINDAVCHEL SMWPEDADDL LLIVDAISRG DLKLVLAACA KAVSEDNLLM 60
ARWCMGQLSG MVSISGEPIQ RLGAYMLEGL VARLAATGSS IYKSLQSREP ESYEFLSYVY 120
FLHEICPYFK FGYMSANGAI AEAMKDEERI HIIDFQIGQG SQWTALIQAF AARPRGAPNI 180
RITGIGEGSN LVAVRKRLEK LAKKFDVPFK FNAVSRSSCE VEVEDLDVRK GEALGVNFAY 240
MLHHLPDESV SMDNHRDRLL RMVKSLSPKV VTLVEQECNT NTSPFLPRFL ETLSYYTAMF 300
ESIDVMLPRN HKERINVEQH CLARDVVNII ACEGAERIER HELLGKWKSR FSMAGFQPYP 360
LSSVVSATIR ALLKDYSNGY GIEERDGALY LGWMGRILVS SCAWK
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC006955 | 0.0 | AC006955.6 Arabidopsis thaliana chromosome 2 clone F28I8 map RNS1, complete sequence. |
| GenBank | AC007211 | 0.0 | AC007211.6 Arabidopsis thaliana chromosome 2 BAC F1O13 genomic sequence, complete sequence. |
| GenBank | AF210732 | 0.0 | AF210732.1 Arabidopsis thaliana scarecrow-like 21 (SCL21) mRNA, complete cds. |
| GenBank | AK175210 | 0.0 | AK175210.1 Arabidopsis thaliana mRNA for putative SCARECROW gene regulator, complete cds, clone: RAFL21-63-H23. |
| GenBank | BT026455 | 0.0 | BT026455.1 Arabidopsis thaliana At2g04890 mRNA, complete cds. |
| GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
