PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

TALE

Protein Properties

Length: 499aa MW: 55647.3 Da PI: 7.3003

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676740818	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.2	1.3e-08	322	359	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ qV++WF N R + 676740818 322 FEHflHPYPKDSDKIMLARQTGLSRGQVSNWFINARVR 359 554459******************************88 PP
2	BELL	127.9	3.6e-41	184	255	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erq+lq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFrcL+dai++qi 676740818 184 ERQDLQSKLSKLLSILDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAISGQI 255 799********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	4.0E-70	124	253	IPR006563	POX domain
Pfam	PF07526	4.5E-47	130	252	IPR006563	POX domain
PROSITE profile	PS50071	11.531	300	363	IPR001356	Homeobox domain
SMART	SM00389	7.0E-9	303	367	IPR001356	Homeobox domain
CDD	cd00086	2.33E-11	303	364	No hit	No description
SuperFamily	SSF46689	4.15E-17	304	370	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.2E-27	306	369	IPR009057	Homeodomain-like
Pfam	PF05920	9.4E-18	320	359	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
MATYYKSSGS NDIYARPNVS EFVPGNAMVY TNPAVSYSET FPGDANNVSA SKEIQVLSSF 60 GGGASQMLEI QDSGIWRNQE DNDRNCFPVM MRPTTGQGLS LGLSSQIETS RGNNNNEYAT 120 QVVSGFTRTI HNSKYLKAAQ ELLDEAVNVK KALKQFQPEG DKIDQQKEKN LQELSTNPDI 180 PQAERQDLQS KLSKLLSILD EVDRRYKQYY HQMQIVVSSF DVIAGCGAAK PYTALALQTI 240 SRHFRCLRDA ISGQILVIRR SLGGEHDGLD GKVVGISRLR NVDQQVRQQR ALQRLGVMQP 300 HTWRPQRGLP DSSVLILRAW LFEHFLHPYP KDSDKIMLAR QTGLSRGQVS NWFINARVRL 360 WKPMVEEMYK EEFTDALEQN GTNLSSKNTP ETTEIQEQQV ESISNNGYVS GVPSSSMGQN 420 TVARGGDRFM MVTEMTKHGS GGMSLTLGIQ NSEARGDVPM SGGINNYENT IPGNDFQYLN 480 SGNRQNRLGS SQLLHDFVA

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

MATYYKSSGS NDIYARPNVS EFVPGNAMVY TNPAVSYSET FPGDANNVSA SKEIQVLSSF  60
GGGASQMLEI QDSGIWRNQE DNDRNCFPVM MRPTTGQGLS LGLSSQIETS RGNNNNEYAT  120
QVVSGFTRTI HNSKYLKAAQ ELLDEAVNVK KALKQFQPEG DKIDQQKEKN LQELSTNPDI  180
PQAERQDLQS KLSKLLSILD EVDRRYKQYY HQMQIVVSSF DVIAGCGAAK PYTALALQTI  240
SRHFRCLRDA ISGQILVIRR SLGGEHDGLD GKVVGISRLR NVDQQVRQQR ALQRLGVMQP  300
HTWRPQRGLP DSSVLILRAW LFEHFLHPYP KDSDKIMLAR QTGLSRGQVS NWFINARVRL  360
WKPMVEEMYK EEFTDALEQN GTNLSSKNTP ETTEIQEQQV ESISNNGYVS GVPSSSMGQN  420
TVARGGDRFM MVTEMTKHGS GGMSLTLGIQ NSEARGDVPM SGGINNYENT IPGNDFQYLN  480
SGNRQNRLGS SQLLHDFVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	7e-15	309	367	5	63	Homeobox protein Meis2
3k2a_B	7e-15	309	367	5	63	Homeobox protein Meis2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676740818

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY056796	0.0	AY056796.1 Arabidopsis thaliana At2g16400/F16F14.10 mRNA, complete cds.
GenBank	BT000609	0.0	BT000609.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g16400/F16F14.10) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024016509.1	0.0	BEL1-like homeodomain protein 7
Refseq	XP_024016510.1	0.0	BEL1-like homeodomain protein 7
Swissprot	Q9SIW1	0.0	BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBL	V4M781	0.0	V4M781_EUTSA; Uncharacterized protein
STRING	XP_006409439.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2869	25	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16400.1	0.0	BEL1-like homeodomain 7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]