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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676740086 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | TCP | ||||||||
Protein Properties | Length: 344aa MW: 38034.8 Da PI: 7.5788 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 116.7 | 3e-36 | 27 | 138 | 2 | 105 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaesssssasnsssg.... 88 +gkkdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+++ak +i++l+++ ++ s+++ + s++ 676740086 27 TGKKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLIKKAKSSIDDLAQLppwnpadtlR---------QAASNAKPKRSKTlpat 117 79**************************************************************5433333320.........22222222222224444 PP TCP 89 ....kaaksaakskksqksaa 105 ++ + +++++++q+s+ 676740086 118 gtehHHHQHHHHHQQQQHSSY 138 443222222223333333332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.8E-33 | 27 | 137 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.652 | 29 | 87 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MADKESNNGG GCGEIVEVEG GHIVRSTGKK DRHSKVCTAK GPRDRRVRLS APTAIQFYDV 60 QDRLGFDRPS KAVDWLIKKA KSSIDDLAQL PPWNPADTLR QAASNAKPKR SKTLPATGTE 120 HHHHQHHHHH QQQQHSSYLP ASMDSDSIAD TIKSFFPVVS TETTPPQHQP RGNTQSQDLR 180 LSLQSTEHAL FSGQHALFDE STAATSWEQS QEVGRMQRLV TWNNVGAGDS GGFVFASPAT 240 TTTTFQAGYG QQSQVFSQRG PLQSINTPMI RAWFDPHHHQ SISTDDDLHL HHHHNHVPTV 300 VHQSAIPGIA FASSGEFSGF RSIPARFHGE HDHHGDKPLS DSRH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-20 | 34 | 87 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 4e-20 | 34 | 87 | 1 | 54 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00203 | DAP | Transfer from AT1G53230 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676740086 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006392814.1 | 1e-151 | transcription factor TCP3 | ||||
Refseq | XP_006392815.1 | 1e-151 | transcription factor TCP3 | ||||
Swissprot | Q9MAH8 | 1e-143 | TCP3_ARATH; Transcription factor TCP3 | ||||
TrEMBL | V4JXC2 | 1e-150 | V4JXC2_EUTSA; Uncharacterized protein | ||||
STRING | XP_006392814.1 | 1e-151 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2408 | 27 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 1e-122 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |
Publications ? help Back to Top | |||
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