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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676740016 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | ARF | ||||||||
Protein Properties | Length: 835aa MW: 92979.9 Da PI: 6.0911 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.5 | 2.9e-24 | 174 | 275 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F +++++el++ 676740016 174 FCKTLTASDTSTHGGFSVPRRAAEDCfapldyK-QQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RDEDGELRL 270 99****************************963.3445679************************************************..5699999** PP EEE-S CS B3 95 kvfrk 99 +++r+ 676740016 271 GIRRS 275 **996 PP | |||||||
2 | Auxin_resp | 106.8 | 2.5e-35 | 299 | 391 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserr.......l....sGtvvgvsdldpvrWpnSkWrsL 82 +a+a+stks+F+v+Y+Pra+++eFv+++ek+ +++++++++G+Rf+m+fe++ds+err + sG+v+gv dldp+rWpnSkWr+L 676740016 299 VANAVSTKSMFHVFYSPRATHAEFVIPYEKYITSIRNPICIGTRFRMRFEMDDSPERRsenivalFscrcSGVVTGVCDLDPYRWPNSKWRCL 391 689*****************************************************974443333134558*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.1E-40 | 165 | 286 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.58E-42 | 168 | 281 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.46E-21 | 172 | 274 | No hit | No description |
Pfam | PF02362 | 3.1E-22 | 174 | 275 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.437 | 174 | 276 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-23 | 174 | 276 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.8E-29 | 299 | 391 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 19.562 | 712 | 794 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.16E-9 | 716 | 787 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 835 aa Download sequence Send to blast |
MEFDLNTEIA EVEEEESDDG GGVVGARIEK GRFGVLPSSS SSCSSGSSSS SSTASASSIY 60 SELWHACAGP LTSLPKKGNV VAYFPQGHLE QDAMVSYPSP LDIPKFDLSP QIFCRVVNVQ 120 LLANKETDEV YTQVTLLPLQ EFSMLNAEGK EARELGGEEE RNGSSSVKRT PHMFCKTLTA 180 SDTSTHGGFS VPRRAAEDCF APLDYKQQRP SQELIAKDLH GVEWKFRHIY RGQPRRHLLT 240 TGWSIFVSQK NLVSGDAVLF LRDEDGELRL GIRRSARPRN GLPDSILEKN SCSNILSLVA 300 NAVSTKSMFH VFYSPRATHA EFVIPYEKYI TSIRNPICIG TRFRMRFEMD DSPERRSENI 360 VALFSCRCSG VVTGVCDLDP YRWPNSKWRC LLVRWDESFM SDHQERVSPW EIDPSASLPP 420 LSIQSSPRPK RPWAGLLDTT PQRNPITGTH PFSLEDMLLQ IVLYIFSGAD DWLLFLESVR 480 PSKVLQGQEN IGSASSPLQG FDVMNRRILD FAMQSHANPV LFSSRVKDRF SEFVDSTSLD 540 PACPSVMDLD RYPRVLQGQE ICSLRSFPQV AGFSPGAASG KPNLGYTDPF AYQNKSSFYP 600 LASQGIRSSH IPYQNPYNAG DKSLSHPSRA VNFGGESRNF VAQNEGGLPK NVTADLPFKI 660 DMMGTQKEGD FNMNASTGCK LFGFSLPVET PSSNPQSSSK RICTKVSLIM ISRVQKVHKQ 720 GSLVGRAIDL SRLNGYNDLL TELERLFNME GLLRDPEKGW RILYTDSEND MMVVGDDPWH 780 DFCNVVLKIH LYTKEEVENA NDDNKSCLEQ AALMMEASKS SSVSQPDFSP TVTRV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-110 | 42 | 414 | 2 | 354 | Auxin response factor 1 |
4ldw_A | 1e-110 | 42 | 414 | 2 | 354 | Auxin response factor 1 |
4ldw_B | 1e-110 | 42 | 414 | 2 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676740016 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY080832 | 0.0 | AY080832.1 Arabidopsis thaliana auxin response factor ARF4 (At5g60450) mRNA, complete cds. | |||
GenBank | AY113977 | 0.0 | AY113977.1 Arabidopsis thaliana auxin response factor ARF4 (At5g60450) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024011962.1 | 0.0 | auxin response factor 4 isoform X1 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | V4N965 | 0.0 | V4N965_EUTSA; Auxin response factor | ||||
STRING | XP_006400848.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9530 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |