PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676740012
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 389aa    MW: 43519.7 Da    PI: 8.8781
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676740012genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-05628123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               + C++C+k F r  nL+ H r H
  676740012  6 FFCEICDKGFQREQNLQLHKRGH 28
               67******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.8E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.81E-7528No hitNo description
PROSITE profilePS5015710.699628IPR007087Zinc finger, C2H2
PfamPF121712.4E-6628IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0089628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551104878IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-471104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.81E-778103No hitNo description
SMARTSM0035521083103IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MATNRFFCEI CDKGFQREQN LQLHKRGHNL PWKLKQKTNK DEVKKKVYVC PEKSCVHHDP  60
ARALGDLTGI KKHFSRKHGE KKWKCEKCSK KYAVISDWKA HSKICGSREY RCDCGTLFSR  120
KDSFITHRAF CDALAYETTK FVSSESSPVA ANLTISTAAG TNNPILIQSQ LDHSLTRTAV  180
PNVNRNQTTL LGYNFSNTDQ IPPQTDAFAL TTSSQEEGSH HWLLNEYMNN NKNAFHEGIS  240
KNQESEIRME NIYNGSNPAG PETASMFLNN RKGNLASLSA TTLLQKAAQL GSSSSSNASP  300
LFGLMTSSII NNTMSNSYCL TKPKSKEEDF TRDFLGVGSR DDKQRLHHYR FSSSVPSTVN  360
HDNLKLAATT VDGEATAYMA SDSEDTRFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-3279143367Zinc finger protein JACKDAW
5b3h_F4e-3279143367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676740012
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012450.10.0protein indeterminate-domain 13
SwissprotF4JYZ80.0IDD13_ARATH; Protein indeterminate-domain 13
TrEMBLV4LR070.0V4LR07_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006400845.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60470.11e-167C2H2 family protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]