PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676739804
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family FAR1
Protein Properties Length: 401aa    MW: 46988.7 Da    PI: 9.3271
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676739804genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.61.3e-20385390
       FAR1  3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
               Y++Y+ + GF++rk+  kk+  ++++++ ++vCskeg+r+e+  k   ++ +++ tr+gCka+++  ++k+g++++ ++e +HnH+l+
  676739804  3 YKKYGGKHGFNIRKQLRKKK--KDKVVRIRYVCSKEGFRKEHVVK---KSYSQPITRCGCKAHMTCYLQKTGRYKIVSFEPNHNHDLV 85
               9************9976665..5669**************98766...999**********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-17385IPR004330FAR1 DNA binding domain
PfamPF105513.6E-36207301IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MAYKKYGGKH GFNIRKQLRK KKKDKVVRIR YVCSKEGFRK EHVVKKSYSQ PITRCGCKAH  60
MTCYLQKTGR YKIVSFEPNH NHDLVIAPMK HLLKVNRSFS VAQKQHANDA EMSGISAKAT  120
IEMRSREVGG RANLGFMVKD YRNYIYRKRT AEMEKGDAGA VLEYFQKKKE NDSSFFYSMQ  180
LDEDAMITNI FWADDRSISD YNLFGDVVCF DTTYKTNEYD RPFAPFVGVN HHKQTVVFGS  240
ALLYDETTES FNWIFETFLG AMSGKQPKTI LTDQCAAMAN AIATMFPETI HRLCVWHIYQ  300
NAAKKLSHSF HGGDQFAMDF GKCVYDHEEE EEWLSAWSKM LKKHELTENK WLKSLFEVKE  360
KWAMVYGRHT FTADMRSYDL LCFFEHYERV LDDRRYQRTN G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11823RKKKKD
21824RKKKKDK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676739804
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023633375.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLR0EZH30.0R0EZH3_9BRAS; Uncharacterized protein
STRINGXP_006281824.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-87FAR1-related sequence 5