PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676739762 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | LBD | ||||||||
Protein Properties | Length: 184aa MW: 20942.6 Da PI: 7.5588 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.8 | 2.3e-40 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrrkC++dCv+apyfpa+++ k+ +vhk+FGas+v +lk+l++++re+am+sl++eA+ar++dPv G++++i +lq+ql+ ++++++ +++e 676739762 7 PCAACKYLRRKCTTDCVFAPYFPANKQDKYDAVHKVFGASHVATILKELHPSHREAAMNSLAFEAKARLHDPVFGCTRIIYNLQRQLKDVQEQIQITRNE 106 7**********************************************************************************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.53 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-39 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Gene3D | G3DSA:3.40.50.2020 | 6.4E-4 | 9 | 56 | IPR029057 | Phosphoribosyltransferase-like |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MENMSTPCAA CKYLRRKCTT DCVFAPYFPA NKQDKYDAVH KVFGASHVAT ILKELHPSHR 60 EAAMNSLAFE AKARLHDPVF GCTRIIYNLQ RQLKDVQEQI QITRNELASY NIVPTLEPPP 120 PITYQQYHHN PTLMPAVSNY GGQLTSQQFP QLRDAAHRFE TKNSDQIQQT HADDAAQSER 180 DNCP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-35 | 3 | 110 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-35 | 3 | 110 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676739762 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006404026.1 | 1e-86 | LOB domain-containing protein 28 | ||||
Swissprot | Q9SCS4 | 3e-68 | LBD28_ARATH; LOB domain-containing protein 28 | ||||
TrEMBL | V4LNZ6 | 2e-85 | V4LNZ6_EUTSA; Uncharacterized protein | ||||
STRING | XP_006404026.1 | 4e-86 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50510.1 | 1e-70 | LOB domain-containing protein 28 |