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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
676739564 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
| Family |
bHLH |
| Protein Properties |
Length: 365aa MW: 40555.5 Da PI: 4.9417 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 676739564 | genome | VEGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 13.5 | 0.00014 | 311 | 352 | 8 | 54 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS
HLH 8 rErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54
+E+ R d+i++a+ L +++P a K ++ L +A++Y+k L
676739564 311 NEQSRKDKIRTALKILESIVPGA------KgNEALLLLDEAIDYLKLL 352
69********************9......5599999*********987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 365 aa
Download sequence Send
to blast |
MVCQSPGKTR FRALKYETGD ANRPTIVVRV IACFQPMDNC QSMPLDTRQR DLPPQACFED 60
IAARSLHPGV PLPDLGKLYA AELQARGFQP PPFQSLLWSH DKESCGKRFS LSDMRSWCAT 120
ATTPHGALES SQKGLMIFDQ TGNQTRLLRC PFPLRFPSPA AAEPVKLSEL QHGLENGFRE 180
DRVTLKEFDE NYINGKESEM HEDTEEINAL LYSDDDYGDA DDDCESDDEV MSTGHSPYPV 240
EQVGNKRALE GIDGPCKRQK LLDKVENISG SSSLVGTKSS TKHNGSSFRK DEKLPESNIS 300
TKEDTGSGLS NEQSRKDKIR TALKILESIV PGAKGNEALL LLDEAIDYLK LLKRDLISTE 360
IKNDC
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor. Involved in stem elongation, probably by regulating a subset of genes involved in this process. {ECO:0000269|PubMed:16936072}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK353013 | 1e-174 | AK353013.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-09-O23. |
| Publications
? help Back to Top |
- Imai A, et al.
The dwarf phenotype of the Arabidopsis acl5 mutant is suppressed by a mutation in an upstream ORF of a bHLH gene.
Development, 2006. 133(18): p. 3575-85
[PMID:16936072] - Imai A,Komura M,Kawano E,Kuwashiro Y,Takahashi T
A semi-dominant mutation in the ribosomal protein L10 gene suppresses the dwarf phenotype of the acl5 mutant in Arabidopsis thaliana.
Plant J., 2008. 56(6): p. 881-90
[PMID:18694459] - Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Cai Q, et al.
The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis.
Plant Cell Physiol., 2016. 57(8): p. 1583-92
[PMID:27388339] - Yamamoto M,Takahashi T
Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis.
Plant Signal Behav, 2017. 12(1): p. e1276685
[PMID:28045577]
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