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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676738422 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | TALE | ||||||||
Protein Properties | Length: 602aa MW: 68918.4 Da PI: 7.0209 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.2 | 6.6e-09 | 409 | 446 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + 676738422 409 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 446 554459******************************88 PP | |||||||
2 | BELL | 102 | 4.4e-33 | 267 | 338 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e++elqk+kakLl +lee+++rY +y+eq++ +++Fe ++g+g+a+ Yt+lA++a+SrhFrcLkd +++qi 676738422 267 EFMELQKRKAKLLAMLEELKRRYGHYREQMRLAAAAFESAVGVGAAETYTALASRAMSRHFRCLKDGLVGQI 338 679*******************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07526 | 1.1E-41 | 193 | 334 | IPR006563 | POX domain |
SMART | SM00574 | 2.1E-65 | 199 | 336 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.017 | 387 | 450 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.6E-9 | 390 | 454 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.58E-10 | 390 | 451 | No hit | No description |
SuperFamily | SSF46689 | 2.95E-17 | 391 | 457 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.5E-28 | 393 | 457 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 7.9E-18 | 407 | 446 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 602 aa Download sequence Send to blast |
MTRDQFYGHN STDHHHRQQQ HQMINQIQGF DETNQNTTDH HQQQQQQQHR YHHQIFGSNS 60 NMGMMIDFSK QHQIRMDHHH HHQTSGGTDQ NQLLEDSSFS MRLCNVNNDF SSEVNDERLP 120 QRPSQGLSLS LSSSNPTSIS LQSFDLRHQQ QEQQGYSGKS THHQNLQHSQ MMMMMMNSQQ 180 QNHNNNNHHQ FQIGSSKYLS PAQELLSEFC SLGVKESDDE VMMMKHKRKQ KGKQQEEWDT 240 SNNNNDQQDQ SATTSSKKHV PPLHSLEFME LQKRKAKLLA MLEELKRRYG HYREQMRLAA 300 AAFESAVGVG AAETYTALAS RAMSRHFRCL KDGLVGQIQA TSQALGERDE DNRGVSIAAR 360 GETPRLRLLD QALRQQKSYR QMSLVEAHPW RPQRGLPERA VTTLRAWLFE HFLHPYPSDV 420 DKHILARQTG LSRSQVSNWF INARVRLWKP MIEEMYCEET RGEEQMEITN QMFIDTKPDP 480 NQIMRVEPES LSSIVTKTGH KDNNNQGTAS FGSTFDFSSY GNQAVTYTGE GGARDVSLTL 540 GLQNGGVSLA LSPVTAQGGP LYYGRDHMEG SVQYTASMLD DDQAQNLPYR NLMGAQLLHD 600 MV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 3e-15 | 396 | 454 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 3e-15 | 396 | 454 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 4e-15 | 396 | 454 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 4e-15 | 396 | 454 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676738422 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352866 | 0.0 | AK352866.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-O06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013637027.1 | 0.0 | PREDICTED: homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 0.0 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | A0A3P6CG88 | 0.0 | A0A3P6CG88_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g142080.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5866 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 0.0 | TALE family protein |
Publications ? help Back to Top | |||
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