PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676738284
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GATA
Protein Properties Length: 278aa    MW: 30685.2 Da    PI: 7.2845
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676738284genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.31.4e-20197231135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++C ttkTp+WR+gp+g+ktLCnaCG+++r+ +l
  676738284 197 CTHCETTKTPQWREGPNGPKTLCNACGVRFRSGRL 231
                *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.9E-15191253No hitNo description
SMARTSM004016.5E-19191241IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.084195227IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-15195228IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.32E-18196245No hitNo description
PfamPF003202.3E-18197231IPR000679Zinc finger, GATA-type
PROSITE patternPS003440197222IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MNWLAEEELK GLSDGFFDDL INHIDFPLDD INGDSDWDAK FQQLEPPPMD IFSSDFTPGI  60
LNTTAPPPFK QSGASAVLSP TNGTLHQSDT KVSKLFQSSS PVSVLESSSD ASFSPHNSSL  120
SQGLAFPVKG LRSKRRRPTT LRLSYLYPFE PTPGESVSET DYSSEQHAKK KRKFSPISHT  180
VSSNSEPISS DGILRKCTHC ETTKTPQWRE GPNGPKTLCN ACGVRFRSGR LVPEYRPASS  240
PTFIPSLHSN SHRKIIEMRR KEGDQFDTTM VHAVVSGA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676738284
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013586198.11e-132PREDICTED: GATA transcription factor 11-like isoform X1
RefseqXP_013586199.11e-132PREDICTED: GATA transcription factor 11-like isoform X1
SwissprotQ6DBP81e-121GAT11_ARATH; GATA transcription factor 11
TrEMBLA0A0D3C8E91e-131A0A0D3C8E9_BRAOL; Uncharacterized protein
STRINGBo5g008670.11e-131(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.21e-114GATA transcription factor 11