PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676737784
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ARR-B
Protein Properties Length: 648aa    MW: 72606.9 Da    PI: 5.1581
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676737784genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.73e-29199252155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                kpr++W++eLH++Fv+av+qL G +kA+Pk+il++m+++gLt+e+v+SHLQkYRl
  676737784 199 KPRVVWSQELHQKFVNAVQQL-GLDKAVPKKILDFMNIEGLTRENVASHLQKYRL 252
                79*******************.********************************8 PP
2Response_reg69.81.2e-23201271109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ ++ l+++l + +y +v+ + ++++ale+l+ek   +Dl++ D+emp+ dG++ll+   e  ++lp+i+++ah++ + + + +  Ga 
     676737784  20 VLAVDDNPTCLRKLEELLLRCKY-HVTKTMESKKALEMLREKSnmFDLVISDVEMPDTDGFKLLEIGLE--MDLPVIMLSAHSDYDSVMKGIIHGAC 113
                   799********************.***************999999******************985344..57************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l+Kp++ +el++
     676737784 114 DYLVKPVSLKELRN 127
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.2E-1691647IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23009.4E-3517162No hitNo description
SuperFamilySSF521721.12E-3017134IPR011006CheY-like superfamily
SMARTSM004489.1E-2718129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.18119133IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.5E-2120128IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.99E-2042132No hitNo description
PROSITE profilePS5129411.287196255IPR017930Myb domain
SuperFamilySSF466893.31E-20196256IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-29197257IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-26199252IPR006447Myb domain, plants
PfamPF002495.2E-9201251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MESMRNEEGR TDQFPVGMRV LAVDDNPTCL RKLEELLLRC KYHVTKTMES KKALEMLREK  60
SNMFDLVISD VEMPDTDGFK LLEIGLEMDL PVIMLSAHSD YDSVMKGIIH GACDYLVKPV  120
SLKELRNIWQ HVVKKNIGSY KKNIGPSRQL LPSSESAPSG SKKRKEKVND SGDEDDSDRE  180
EEDCEGSEQD GDESSTRKKP RVVWSQELHQ KFVNAVQQLG LDKAVPKKIL DFMNIEGLTR  240
ENVASHLQKY RLYLRKIDEG QQQSMNQDAF GTRDSSYFHM TQFDGLRDFT STRQLPSSSL  300
LTRSHLTKYH PSVYSSINLQ GSNSSSFIQQ GHHQSSSSSA NPFGTFHRPL LPRSQNVNLS  360
PLEPLQFPRS KCSSYMGDYK GIGDRAIGSS FLDSRMSFGS SSNSLPSASS NNLMLQENFT  420
QPLNRASDGN QSCLEGAPSN SVSQNISVDG LSRFPSHSWQ GNLKTTTRFP SNSLPTNHVF  480
SQDQVTCAGN GLGDYNTSLV SGENHCGVMQ CEPPLLGDYM QNMNTLNGPK WEEQNCTMLN  540
NTFGNVDYPL PADNNMVYRD NNETRSKALD DSLMMSPIED SATTLNSREY VGNLTMLDQE  600
MKSEKPENDL VDNQHVFDDI MNEMLKQDEN NGMGSVATRF GLDSFPPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-23195257163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00057PBMTransfer from AT5G58080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676737784
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013713997.10.0two-component response regulator ARR18
SwissprotQ9FGT70.0ARR18_ARATH; Two-component response regulator ARR18
TrEMBLA0A3P6AGI00.0A0A3P6AGI0_BRACM; Uncharacterized protein
STRINGBo2g028820.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142821823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.10.0response regulator 18