PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676737714
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 416aa    MW: 46558.7 Da    PI: 4.3541
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676737714genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.34e-12113518128
        NAM  18 yLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya....tgkrknr.a...tksgyWkatgkdkevlsk.kgelvglkktL 106
                yL +k+++++ ++e++i + ++y+ ePw L+++++   +++ew++F++r + +     +gk+++r +    + g Wka  k k++ +  +++++g k+tL
  676737714   1 YLLRKLKDEE-DFEDFIVTKNVYEREPWLLDHTTHPlfKKNEWFYFVPRTQVSLknigRGKKSKRrImenSHGGSWKANSK-KDIEDPeTDNVIGKKQTL 98 
                9999999999.55589**************84332245889*******99877644444555555244445599***9987.78887757888******* PP

        NAM 107 vfy.......kgrapkge..............ktdWvmheyrl 128
                +f        k      +               ++W+m ey+l
  676737714  99 TFKksndnqkK------QktggdgasvvvpgsDCTWTMYEYTL 135
                ***54443320......21122233333333377788877775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-181152IPR003441NAC domain
PfamPF023659.3E-81135IPR003441NAC domain
PROSITE profilePS5100522.1171152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
YLLRKLKDEE DFEDFIVTKN VYEREPWLLD HTTHPLFKKN EWFYFVPRTQ VSLKNIGRGK  60
KSKRRIMENS HGGSWKANSK KDIEDPETDN VIGKKQTLTF KKSNDNQKKQ KTGGDGASVV  120
VPGSDCTWTM YEYTLPGEDK FQELVLCKIK KTKGDDQPDE PIPDSSSEQP PTNIDYQTVV  180
APSSLVPQQP CLCNGNGPYM GYVTSSTCYA AETERIGEHS GEGNMVREID AMEDVDRIGG  240
DDCIGDDGMM IDLGHMLDRL PEDDETEGIN SEDQQQQPTN IDHQNVLVPA SLVQQQPWLC  300
NGNGPEIPHM GYMSSSTYYA AETERLEEHS GEGNMVHEVD AYSTMDGKVD AMEVTQEVDW  360
IGDLMDKYAT KGMEAVLGIN TVDQQKPPIP APAHMNVVAP ARRGDKSLPI ELDDDS
Cis-element ? help Back to Top
SourceLink
PlantRegMap676737714
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018465861.11e-74PREDICTED: NAC domain-containing protein 53-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.13e-13NAC domain containing protein 88