PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676737418
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bZIP
Protein Properties Length: 173aa    MW: 18756.8 Da    PI: 7.5784
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676737418genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.21.5e-123575545
               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
               ++ +rkq+NRe+ArrsR RK++ ++ L+  v+ L +eN + 
  676737418 35 RKRKRKQSNRESARRSRMRKQKHLDDLTSQVAHLRKENNQI 75
               5789**********************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.4E-1131109No hitNo description
SMARTSM003382.8E-163195IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.8063396IPR004827Basic-leucine zipper domain
PfamPF001703.4E-103575IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.25E-113588No hitNo description
CDDcd147027.41E-203686No hitNo description
PROSITE patternPS0003603853IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MGSSTSGNCS SISTTGLQNS GSESDLRQRD LIDERKRKRK QSNRESARRS RMRKQKHLDD  60
LTSQVAHLRK ENNQIVAGIA VTTQHYVAIE AENSILRAQL TELNHRLTSL NEIIEFVESS  120
SGGFGMETGQ GGGGGGLMDF GGVYDGAMNP LNLGFYNQPI MASASTAADV FNC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13439RKRKRK
23455RKRKRKQSNRESARRSRMRKQK
34754RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676737418
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_177672.21e-104basic leucine-zipper 44
SwissprotC0Z2L51e-105BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A178W5971e-102A0A178W597_ARATH; Uncharacterized protein
STRINGAT1G75390.11e-103(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.17e-81basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]