PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676737404
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 427aa    MW: 46205.7 Da    PI: 8.6549
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676737404genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.82.7e-11326327
               S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                elCr+f++ G C+yG+rC++ H++
  676737404  3 KELCRNFQQ-GSCRYGERCRYLHPQ 26
               69*******.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-7126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.924127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.01E-6225IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-8326IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MRKELCRNFQ QGSCRYGERC RYLHPQQTSF GTSSRDQQQQ QQPQQHKTSN PFGFGVGGGS  60
NSNRPNQSQP FQNTWQRNPS TPAGGGASST QQSGKQTQQA DHKCTDPAAC KRLMQEDFKN  120
ERPMWKLTCY AHWKYFPCDV TGDISYEELR AMAYEEAKRG IPLQSIVERE RNLQNTKVAE  180
FENFLRNPYR GAVTANQNPF ATPTPSIFPP ASQVNSPPAV SVFNQQPAFP NTTNGGGVSS  240
SGPPNPFARF NQQPNAFTVN TPQPVPSGPS GFQSQPSVTF KPASFGPGPV APPSGFQSQP  300
SVTFKPASFG PGPGLATGPS GFQSQPSVTF KPASFGPGPG LATQNSNNFP SITPTPASNT  360
SQNNQTPFNF NTTNPSFTAP AIDSTNTPSG TELQTEGAPV DSSIWLKESW NPGEIPEQAP  420
PDAFVYQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap676737404
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0371951e-138AY037195.1 Arabidopsis thaliana At1g75340/F1B16_18 mRNA, complete cds.
GenBankBT0147441e-138BT014744.1 Arabidopsis thaliana At1g75340.1 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444257.10.0PREDICTED: zinc finger CCCH domain-containing protein 16-like
RefseqXP_018444259.10.0PREDICTED: zinc finger CCCH domain-containing protein 16-like
SwissprotQ9FWS30.0C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBLM4DH740.0M4DH74_BRARP; Uncharacterized protein
STRINGBra015851.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107242731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.11e-136C3H family protein