PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

MYB_related

Protein Properties

Length: 274aa MW: 30146.5 Da PI: 6.951

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676737300	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.3	1.9e-14	99	143	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+Wk I++ + k+Rt q+ s+ qky 676737300 99 PWTEEEHKLFLLGLQKVGKGDWKGISKNFVKTRTSTQVASHAQKY 143 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.7	92	148	IPR017930	Myb domain
SuperFamily	SSF46689	2.3E-17	94	149	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-17	95	146	IPR006447	Myb domain, plants
SMART	SM00717	2.6E-10	96	146	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-11	98	143	IPR009057	Homeodomain-like
CDD	cd00167	1.44E-9	99	144	No hit	No description
Pfam	PF00249	8.3E-12	99	143	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009733	Biological Process	response to auxin
GO:0009737	Biological Process	response to abscisic acid
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0046686	Biological Process	response to cadmium ion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MADVSSCCSS ESTVDGNSGI SREIMLFGVR VVLDPMRKSV SLNNLSEYEQ TDEIPKISSE 60 DRDGQEDKKN KTSSGYASAD DAVPISSSGG NRERKRGVPW TEEEHKLFLL GLQKVGKGDW 120 KGISKNFVKT RTSTQVASHA QKYFLRRSNL NRRRRRSSLF DMTTDTVMPM EEDQMLMQEN 180 TPQTSSLVPE IVNSFSIHPV MQAFPVYPVQ TSGDNNASGN QSYGKLSSSN LSNPAPFSFQ 240 AMSEPISLNL SLASSNLNEP SSSRHSAFNT IGVA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00236	DAP	Transfer from AT1G74840	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676737300

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018445545.1	1e-127	PREDICTED: transcription factor MYB1R1-like
Refseq	XP_018445564.1	1e-127	PREDICTED: transcription factor MYB1R1-like
Swissprot	Q2V9B0	1e-60	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	R0IBE6	1e-122	R0IBE6_9BRAS; Uncharacterized protein (Fragment)
STRING	Cagra.0402s0045.1.p	1e-125	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2461	26	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.1	1e-111	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]