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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676735962 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | NAC | ||||||||
Protein Properties | Length: 255aa MW: 29415.2 Da PI: 7.9949 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 125.9 | 3.3e-39 | 5 | 133 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 +GfrF+Ptd+e+v++yL+ k g++ ++e+i+++di++++Pw+Lp ++++++++ wyfF ++++ky++g+r++r tksg+Wk+tg + +v++k 676735962 5 VGFRFRPTDDEIVDHYLRLKNLGDStsrSYVDEAITTLDICSFDPWELPcqSRMESRDQVWYFFGRKENKYHRGERQSRGTKSGFWKKTGVTMDVKRKrg 104 8*******************99988665445668**************96448889999*************************************9977 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e++g ++L+fy +g+k++Wvmhey++ 676735962 105 NREKIGEERVLMFY----MSGSKSNWVMHEYHA 133 7888**********....7899*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 40.95 | 3 | 152 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.63E-40 | 4 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-22 | 5 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MVTVVGFRFR PTDDEIVDHY LRLKNLGDST SRSYVDEAIT TLDICSFDPW ELPCQSRMES 60 RDQVWYFFGR KENKYHRGER QSRGTKSGFW KKTGVTMDVK RKRGNREKIG EERVLMFYMS 120 GSKSNWVMHE YHATCLSPAQ NMTYTICKVQ FKGEAREISS SAGEIVEHTH SLTTHMNKNN 180 YGQLSTGSEE LQNPPEVSGV LDKQQKMQLE VSIQKAFDSL LSYDWKSLLD VLDENEQSKT 240 ASMQKSLTSV LIGHR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-24 | 6 | 131 | 18 | 138 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676735962 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013695676.1 | 1e-114 | NAC domain-containing protein 5-like | ||||
Swissprot | O81914 | 2e-93 | NAC5_ARATH; NAC domain-containing protein 5 | ||||
TrEMBL | M4EWW4 | 1e-107 | M4EWW4_BRARP; Uncharacterized protein | ||||
STRING | Bra033299.1-P | 1e-108 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2315 | 16 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02250.1 | 1e-95 | NAC domain containing protein 5 |
Publications ? help Back to Top | |||
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