PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676735776

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

FAR1

Protein Properties

Length: 707aa MW: 81654.4 Da PI: 6.685

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676735776	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.1	5.1e-22	100	183	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YA+evGF+vr+++s ++r++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w+v ++ l+HnH+l 676735776 100 NYYNCYASEVGFRVRVKNSWFKRRSKEKYGAVLCCSSQGFKRINDVN-----RVRKETRTGCPAMIRMRQVDSKRWRVLEVTLDHNHSL 183 69***************************************9988.....999******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-19	100	183	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.0E-25	301	393	IPR018289	MULE transposase domain
Pfam	PF04434	6.2E-5	576	620	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.606	588	624	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	599	626	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 707 aa Download sequence Send to blast
MERCDSGDVD VEASAYLQTD ETHERDDPLS DGGCTLRIGE ALVCTSDHEL DVGFSQNEQR 60 KTEEEETREF DEQLGLSVES KEFDPPAVGM EFESYDDAYN YYNCYASEVG FRVRVKNSWF 120 KRRSKEKYGA VLCCSSQGFK RINDVNRVRK ETRTGCPAMI RMRQVDSKRW RVLEVTLDHN 180 HSLGSKIYNS VKRCGTKRKS VSSPDSDAKT IKLYRARVMD IGNNVNSNST TKKQFQNSSA 240 SPDLLNLRRG DPAAVYNYFC RMQLTNPNFF YLMDINDEGQ LRNVFWADGF SKVSCSYFND 300 VIFIDNTYIS GKFEIPLVTL VGVNHHGQTT LLGCGLLAGE TTESYNWLLK VWLGVMKCSP 360 QTIVTDICKP LEAAISQVFP RSYHRFSLTH IMRKIPEKLG GLHNYDGVRK AFTKAVYDTL 420 KVVEFEAAWG FMVHSFGVID NEWLRSLYED RARWAPVYLK DTFFAGMATS RPGETLSPFF 480 ERYVHKQTPL KEFLDKYELA LHKKHREETL GDLESLTLST AELKTKCSFE TQLSRIYTRD 540 MFKKFQVEVE EMYSCFSTTQ LHVDGPFVIF LVKERVQVES NRREIRDFEV LYNRSVGEVR 600 CICSCFNFYG YLCRHALCVL NFNGVEEIPL RYVLPRWRKD YKRLHAADNG LTGFVDGTDR 660 VQWFDQLYKN ALQVVEEGAV SLDHYKVAMQ ALQESLERVH SVEEKQD

Sequence ? help Back to Top

Protein Sequence Length: 707 aa Download sequence Send to blast

MERCDSGDVD VEASAYLQTD ETHERDDPLS DGGCTLRIGE ALVCTSDHEL DVGFSQNEQR  60
KTEEEETREF DEQLGLSVES KEFDPPAVGM EFESYDDAYN YYNCYASEVG FRVRVKNSWF  120
KRRSKEKYGA VLCCSSQGFK RINDVNRVRK ETRTGCPAMI RMRQVDSKRW RVLEVTLDHN  180
HSLGSKIYNS VKRCGTKRKS VSSPDSDAKT IKLYRARVMD IGNNVNSNST TKKQFQNSSA  240
SPDLLNLRRG DPAAVYNYFC RMQLTNPNFF YLMDINDEGQ LRNVFWADGF SKVSCSYFND  300
VIFIDNTYIS GKFEIPLVTL VGVNHHGQTT LLGCGLLAGE TTESYNWLLK VWLGVMKCSP  360
QTIVTDICKP LEAAISQVFP RSYHRFSLTH IMRKIPEKLG GLHNYDGVRK AFTKAVYDTL  420
KVVEFEAAWG FMVHSFGVID NEWLRSLYED RARWAPVYLK DTFFAGMATS RPGETLSPFF  480
ERYVHKQTPL KEFLDKYELA LHKKHREETL GDLESLTLST AELKTKCSFE TQLSRIYTRD  540
MFKKFQVEVE EMYSCFSTTQ LHVDGPFVIF LVKERVQVES NRREIRDFEV LYNRSVGEVR  600
CICSCFNFYG YLCRHALCVL NFNGVEEIPL RYVLPRWRKD YKRLHAADNG LTGFVDGTDR  660
VQWFDQLYKN ALQVVEEGAV SLDHYKVAMQ ALQESLERVH SVEEKQD

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676735776

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020868132.1	0.0	protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	V4KS69	0.0	V4KS69_EUTSA; Uncharacterized protein
STRING	XP_006392912.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10788	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]