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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676735566 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | C3H | ||||||||
Protein Properties | Length: 610aa MW: 67476.8 Da PI: 7.0267 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.7 | 4.1e-08 | 264 | 284 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd+C +aHg 676735566 264 PCPEFRK-GSCPKGDSCEYAHG 284 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 1.4E-13 | 36 | 182 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 3.73E-12 | 76 | 161 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 3.5E-4 | 78 | 108 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 8.523 | 78 | 102 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 13.708 | 78 | 176 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF13637 | 1.5E-7 | 79 | 131 | No hit | No description |
CDD | cd00204 | 9.33E-11 | 80 | 176 | No hit | No description |
SMART | SM00248 | 140 | 113 | 145 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 6.3E-5 | 259 | 285 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.976 | 259 | 286 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-5 | 264 | 285 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-5 | 264 | 284 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 37 | 294 | 317 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.465 | 294 | 318 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 610 aa Download sequence Send to blast |
MCGSKSNLCS SKTLTEAELM RGKTEDGEGV ASATCLLEYA ACDDLSSFRR ETEEKSLNID 60 EPGFWYCRRV GSKKMGFEER TPLMVAAMYG SIEVLSYIIS TGKSDVNRVS GDEKVTAVHC 120 ALSGCSVSIV EVIKILLDAS ASPNCVDANG NKPVDLLVRA SRFMPNQSRK AVELLLTGNH 180 GSVSLMEEEE EEEVKSVVTK YPADATLPDI NEGVYGTDEF RMFSFKVKPC SRAYSHDWTE 240 CPFVHPGENA RRRDPRKYPY TCVPCPEFRK GSCPKGDSCE YAHGVFESWL HPAQYRTRLC 300 KDETGCARRV CFFAHRRDEL RPVNASTGSA MVSPRSSNQS PEMSVMSPLT LGSSPMSSPM 360 ANNGVPLSPR NGGLWQNRVN SLTPPPLQLN GSRLKSSLSA RDMDIEMELR LRGLDNRRLS 420 DLNPSNLEET FGSYDSSSVM QLQSPSRHSQ MNHYPSSPVR QAPPQGFESS AAMAAAVMNA 480 RSSAFAKRSM SFKPAPVASS NVSDWGSPNG KLEWGMQREE LNKLRRSVSF GIHGNNNNNN 540 NVSRPVRDYS DEPDVSWVNS LVKESAQERA FGLNERVGNA VNGAMVRDNF KLPSWAEQMY 600 IDHEKQQIVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676735566 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020883942.1 | 0.0 | zinc finger CCCH domain-containing protein 29 | ||||
Swissprot | Q9XEE6 | 0.0 | C3H29_ARATH; Zinc finger CCCH domain-containing protein 29 | ||||
TrEMBL | R0HRW6 | 0.0 | R0HRW6_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.23794s0043.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM877 | 26 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40140.2 | 0.0 | C3H family protein |