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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
676734824 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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| Family |
bHLH |
| Protein Properties |
Length: 409aa MW: 45982.5 Da PI: 8.2603 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 676734824 | genome | VEGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 36.5 | 8.4e-12 | 231 | 277 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
h+ Er+RR++i +++ L++llP++ K +K++ L +A++Y++ Lq
676734824 231 VHKLSERKRRNEISKKMRALQDLLPNC-----YKDDKVSLLDEAIKYMRTLQ 277
6999**********************8.....6******************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 409 aa
Download sequence Send
to blast |
MGKNPRASSS SKPNMISPSS SFKPTLNDQD YMELVCENGQ IFAKSRRCNN NGSFQNKRTQ 60
SILDLYEAEY DESFKKNIKN LGDTQVVPVS ETQQPQQDEK ETNNKKRIKS SKIEFERDVL 120
KGNKRFESST LNDDSSKGLK NVEVITTPPD EQSAAVGIST ELYFAPSSMF SRGTSRDLSC 180
CSFKRKEYED IEEEESTYLS NNSDDESDGA KTRVPAKTRT SIAKRKRSTE VHKLSERKRR 240
NEISKKMRAL QDLLPNCYKD DKVSLLDEAI KYMRTLQLQV QMMNMRNGLI QPSTMFPMGH 300
YSPMGLGMHM STAAPTTSVP QFLPMNFQGT SFPGINHASP QMLSSFVNHP TGLIQNSPIF 360
SPLESCSQQF VVPSCFPETT HATSFTQFPK SASTADQEDA IQFRGSNGY
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 224 | 239 | RKRSTEVHKLSERKRR |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. Involved in responses to transient and long-term shade. Required for the light-mediated inhibition of hypocotyl elongation. Necessary for rapid light-induced expression of the photomorphogenesis- and circadian-related gene APRR9. Seems to play a role in multiple PHYB responses, such as flowering transition and petiole elongation. {ECO:0000269|PubMed:14668869, ECO:0000269|PubMed:16565297, ECO:0000269|PubMed:16891401}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expressed with a circadian rhythm showing peaks during the light period. Up-regulated by simulated shade in light-grown plants, in a phytochrome-dependent manner; low red/far-red ratio (R/FR) light, but repressed by a high R/FR light. Rapidly down-regulated after seedling deetiolation. {ECO:0000269|PubMed:14668869, ECO:0000269|PubMed:16565297, ECO:0000269|PubMed:16891401}. |
