PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bHLH

Protein Properties

Length: 347aa MW: 39505.4 Da PI: 6.5258

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676734790	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.6	3.9e-12	169	219	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r++h ++Er+RR+++N ++ Lr+l+P++ + + + a+i+ A++++k L 676734790 169 QRMTHIAVERNRRRQMNVHLNSLRSLIPSS---YILRGDQASIVGGAIDFVKIL 219 79**************************...9*************99866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.22E-14	160	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.1E-12	167	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.24E-10	167	224	No hit	No description
PROSITE profile	PS50888	14.31	168	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-9	169	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.1E-9	174	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MSPEWVAFNA VDSLDQKVIV RRSFEVQGSA EDQSLALEED TRIPFLQMLQ QSGEDPSSVL 60 SFKDPNFLAL LSLQTLEKPW ELGKNNLPHE VPEFHSPIDS ETYYHYQNPS LEGISEAISR 120 QELQLNQVEN ASSRRKRRNN NLPTASMSRE KRKRRRTKPT KNTEEMESQR MTHIAVERNR 180 RRQMNVHLNS LRSLIPSSYI LRGDQASIVG GAIDFVKILE QHLQSLEAQK ITKQTDGEDS 240 NNLREVSSNE LRGSGTSTNE EETSKLRIDA TVIESHVNLK IQCPRKQGQL LRSIILLEKL 300 RFTVLHLNIT SPCNASVSYS FNLKMEEECS LGSADEIMAA VRQIFDG

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MSPEWVAFNA VDSLDQKVIV RRSFEVQGSA EDQSLALEED TRIPFLQMLQ QSGEDPSSVL  60
SFKDPNFLAL LSLQTLEKPW ELGKNNLPHE VPEFHSPIDS ETYYHYQNPS LEGISEAISR  120
QELQLNQVEN ASSRRKRRNN NLPTASMSRE KRKRRRTKPT KNTEEMESQR MTHIAVERNR  180
RRQMNVHLNS LRSLIPSSYI LRGDQASIVG GAIDFVKILE QHLQSLEAQK ITKQTDGEDS  240
NNLREVSSNE LRGSGTSTNE EETSKLRIDA TVIESHVNLK IQCPRKQGQL LRSIILLEKL  300
RFTVLHLNIT SPCNASVSYS FNLKMEEECS LGSADEIMAA VRQIFDG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	155	KRRNNNLPTASMSREKRKRRR
2	150	155	KRKRRR
3	151	155	RKRRR
4	151	156	RKRRRT
5	151	158	RKRRRTKP
6	169	180	RMTHIAVERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676734790

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001324835.1	1e-165	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Swissprot	O81037	1e-166	BH070_ARATH; Transcription factor bHLH70
TrEMBL	A0A384KPF2	1e-164	A0A384KPF2_ARATH; Uncharacterized protein
TrEMBL	I2FGF6	1e-164	I2FGF6_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein
STRING	Bostr.25993s0085.1.p	1e-180	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3119	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46810.1	1e-155	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]