PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676734562
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 446aa    MW: 48778 Da    PI: 8.4831
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676734562genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07126146526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C+f+ + G Ck G++C+F H+
  676734562 126 ICKFWEA-GNCKKGEQCQFVHS 146
                6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.5E-5121147IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6122146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.469126148IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-4126146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5126146IPR000571Zinc finger, CCCH-type
SMARTSM003200.01152191IPR001680WD40 repeat
SuperFamilySSF509787.78E-43152442IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.106.3E-41154441IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004000.15156191IPR001680WD40 repeat
PROSITE profilePS5008212.046159200IPR001680WD40 repeat
PROSITE profilePS5029419.776159446IPR017986WD40-repeat-containing domain
PROSITE patternPS006780178192IPR019775WD40 repeat, conserved site
PRINTSPR003204.1E-6178192IPR020472G-protein beta WD-40 repeat
SMARTSM0032060231268IPR001680WD40 repeat
SMARTSM003202.2E-5276313IPR001680WD40 repeat
PfamPF004005.6E-5278313IPR001680WD40 repeat
PROSITE profilePS5008212.547283322IPR001680WD40 repeat
PROSITE patternPS006780300314IPR019775WD40 repeat, conserved site
PRINTSPR003204.1E-6300314IPR020472G-protein beta WD-40 repeat
SMARTSM003200.039316353IPR001680WD40 repeat
SMARTSM0032091359400IPR001680WD40 repeat
SMARTSM003203.3403440IPR001680WD40 repeat
PRINTSPR003204.1E-6427441IPR020472G-protein beta WD-40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MSSMNHKAPR RYSQGRNFGV DRQQDFAADI VPRRSSVPYE HRVKKGPFKG SRNLVWTSKE  60
FQESEGNRPR KYDSCGSMKS PAIRTGYHVP HQLRKNAVHG SRSSSASGSR VWRSEDNGSP  120
KSRECICKFW EAGNCKKGEQ CQFVHSWCSF PGLVMVATLE GHEKGVKGIG LPQGSDKLYS  180
ASSDGASRVW DCHTGQCVHE VKLQAEAGSL ISEDSWVFLG LPNAVKAFNV QTCKDLHLDG  240
PVGQVNAIAL GNGMLFGGTS SGSISVWKAT DTESDPFKYL TSLDGHSDEV KCLIVGGQTL  300
YSGSVDRTIK VWDLNTLQCT MTLRQHRDTV TSLLCWDQYM LSSSLDGAIL VWGSCESSNL  360
QVIHTRREEQ SVHALCGVND AKANPIIFCS YQNGTVGIYD LPSFEERGKM LSTHTIGTLA  420
IGPGGLLFSG DKSGKLRVWS LGGSKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A7e-1815844110323Tako8
6g6n_A7e-1815844110323Tako8
6g6n_B7e-1815844110323Tako8
6g6n_C7e-1815844110323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676734562
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019100641.10.0PREDICTED: zinc finger CCCH domain-containing protein 59-like
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A087H5G00.0A0A087H5G0_ARAAL; Uncharacterized protein
STRINGA0A087H5G00.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein