PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

676734346

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

HB-other

Protein Properties

Length: 521aa MW: 58220.5 Da PI: 7.8303

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676734346	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.5	4.6e-18	21	76	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ q+ +Le+++++++yp++e+++++A++++Lte+qV+ WF+ rR k+k+ 676734346 21 KKRKLKTPIQVMALENFYNEHKYPTEEMKAKIAEEIELTEKQVSGWFCHRRLKDKR 76 899***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-19	7	76	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.439	17	77	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.57E-16	19	84	IPR009057	Homeodomain-like
SMART	SM00389	3.0E-18	19	81	IPR001356	Homeobox domain
CDD	cd00086	8.10E-17	21	77	No hit	No description
Pfam	PF00046	1.8E-15	21	76	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MLSDSGEVPA DGDKTSAENN KKRKLKTPIQ VMALENFYNE HKYPTEEMKA KIAEEIELTE 60 KQVSGWFCHR RLKDKRSGKE DGNNIGSQDR SSVVLQDRGS GLRQDSCGST KQTDYWNPKP 120 REVESQRLYG GSYMRNVDGE DSTSSERSSS LHKNLVSSKD GIRDVESSRF VAHNEHPQVM 180 RSYGYSNKPS GYLKVKGDTE NVAITAVKRQ LGRQYREDGP PLGVEFDPLP PGAFEPQTNV 240 IVQEPIYVGN QRRPHPPYFT GTRKSFIPGP SYELARKSKM HSADPYSEDD DDDDDDDDNI 300 MGGMEPGLGD KHPALDHSSL KGTFKGPPQG IPLTNNKKSR VSSESRAEGS RNNLIPNFHN 360 LSGSNIGTNQ THDHDKSIFN GGRKTGYLSK SSKMLPLSSS RSPVSMERGP SSGMVGKYHG 420 EKMNHMKMHR EKLHSTGEPQ VTKRLKHEYP QQQVYAPKPL NSDIFGLKDQ TNRLVNIIMH 480 LFPQKRGQID LWDNTYGCRS GAELPSSLSG DETEESSSSM D

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MLSDSGEVPA DGDKTSAENN KKRKLKTPIQ VMALENFYNE HKYPTEEMKA KIAEEIELTE  60
KQVSGWFCHR RLKDKRSGKE DGNNIGSQDR SSVVLQDRGS GLRQDSCGST KQTDYWNPKP  120
REVESQRLYG GSYMRNVDGE DSTSSERSSS LHKNLVSSKD GIRDVESSRF VAHNEHPQVM  180
RSYGYSNKPS GYLKVKGDTE NVAITAVKRQ LGRQYREDGP PLGVEFDPLP PGAFEPQTNV  240
IVQEPIYVGN QRRPHPPYFT GTRKSFIPGP SYELARKSKM HSADPYSEDD DDDDDDDDNI  300
MGGMEPGLGD KHPALDHSSL KGTFKGPPQG IPLTNNKKSR VSSESRAEGS RNNLIPNFHN  360
LSGSNIGTNQ THDHDKSIFN GGRKTGYLSK SSKMLPLSSS RSPVSMERGP SSGMVGKYHG  420
EKMNHMKMHR EKLHSTGEPQ VTKRLKHEYP QQQVYAPKPL NSDIFGLKDQ TNRLVNIIMH  480
LFPQKRGQID LWDNTYGCRS GAELPSSLSG DETEESSSSM D

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676734346

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ441296	0.0	AJ441296.1 Arabidopsis thaliana mRNA for homeodomain protein 14 (hd-14 gene).
GenBank	BT026372	0.0	BT026372.1 Arabidopsis thaliana At4g03250 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013608630.1	0.0	PREDICTED: uncharacterized protein LOC106315448
TrEMBL	A0A1J3D4B5	0.0	A0A1J3D4B5_NOCCA; Homeobox protein BarH-like 1
STRING	Bo9g006450.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12202	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	0.0	HB-other family protein