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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676734346 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | HB-other | ||||||||
Protein Properties | Length: 521aa MW: 58220.5 Da PI: 7.8303 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.5 | 4.6e-18 | 21 | 76 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ q+ +Le+++++++yp++e+++++A++++Lte+qV+ WF+ rR k+k+ 676734346 21 KKRKLKTPIQVMALENFYNEHKYPTEEMKAKIAEEIELTEKQVSGWFCHRRLKDKR 76 899***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-19 | 7 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.439 | 17 | 77 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.57E-16 | 19 | 84 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.0E-18 | 19 | 81 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.10E-17 | 21 | 77 | No hit | No description |
Pfam | PF00046 | 1.8E-15 | 21 | 76 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 521 aa Download sequence Send to blast |
MLSDSGEVPA DGDKTSAENN KKRKLKTPIQ VMALENFYNE HKYPTEEMKA KIAEEIELTE 60 KQVSGWFCHR RLKDKRSGKE DGNNIGSQDR SSVVLQDRGS GLRQDSCGST KQTDYWNPKP 120 REVESQRLYG GSYMRNVDGE DSTSSERSSS LHKNLVSSKD GIRDVESSRF VAHNEHPQVM 180 RSYGYSNKPS GYLKVKGDTE NVAITAVKRQ LGRQYREDGP PLGVEFDPLP PGAFEPQTNV 240 IVQEPIYVGN QRRPHPPYFT GTRKSFIPGP SYELARKSKM HSADPYSEDD DDDDDDDDNI 300 MGGMEPGLGD KHPALDHSSL KGTFKGPPQG IPLTNNKKSR VSSESRAEGS RNNLIPNFHN 360 LSGSNIGTNQ THDHDKSIFN GGRKTGYLSK SSKMLPLSSS RSPVSMERGP SSGMVGKYHG 420 EKMNHMKMHR EKLHSTGEPQ VTKRLKHEYP QQQVYAPKPL NSDIFGLKDQ TNRLVNIIMH 480 LFPQKRGQID LWDNTYGCRS GAELPSSLSG DETEESSSSM D |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676734346 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ441296 | 0.0 | AJ441296.1 Arabidopsis thaliana mRNA for homeodomain protein 14 (hd-14 gene). | |||
GenBank | BT026372 | 0.0 | BT026372.1 Arabidopsis thaliana At4g03250 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013608630.1 | 0.0 | PREDICTED: uncharacterized protein LOC106315448 | ||||
TrEMBL | A0A1J3D4B5 | 0.0 | A0A1J3D4B5_NOCCA; Homeobox protein BarH-like 1 | ||||
STRING | Bo9g006450.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12202 | 25 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03250.1 | 0.0 | HB-other family protein |