PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676733630
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GeBP
Protein Properties Length: 1118aa    MW: 119189 Da    PI: 4.8492
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676733630genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573118.34.3e-37132230298
     DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                lfqrlw++eDei lL+G++d+ ++++g+s++  d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq++fe+s+kiW++
  676733630 132 LFQRLWTDEDEIELLRGFLDYiTTHRGSSSHPpDTAPFYEQIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQSTFEISRKIWNQ 230
                79*******************9999***99999****************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.2E-33133229IPR007592Protein of unknown function DUF573
SuperFamilySSF536869.56E-94475774IPR001926Tryptophan synthase beta subunit-like PLP-dependent enzyme
PfamPF002911.8E-62479766IPR001926Tryptophan synthase beta subunit-like PLP-dependent enzyme
TIGRFAMsTIGR011369.7E-119480772IPR005856Cysteine synthase
TIGRFAMsTIGR011392.1E-123480772IPR005859Cysteine synthase CysK
CDDcd015611.45E-142484771No hitNo description
PROSITE patternPS009010505523IPR001216Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site
Gene3DG3DSA:3.40.50.11007.1E-35511608No hitNo description
Gene3DG3DSA:3.40.50.11004.5E-74609773No hitNo description
SuperFamilySSF536863.54E-978021108IPR001926Tryptophan synthase beta subunit-like PLP-dependent enzyme
PfamPF002913.4E-628061092IPR001926Tryptophan synthase beta subunit-like PLP-dependent enzyme
TIGRFAMsTIGR011361.2E-1248071105IPR005856Cysteine synthase
TIGRFAMsTIGR011391.5E-1288071105IPR005859Cysteine synthase CysK
CDDcd015619.10E-1358111101No hitNo description
PROSITE patternPS009010832850IPR001216Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site
Gene3DG3DSA:3.40.50.11003.7E-35838935No hitNo description
Gene3DG3DSA:3.40.50.11005.1E-799361107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006535Biological Processcysteine biosynthetic process from serine
GO:0004124Molecular Functioncysteine synthase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1118 aa     Download sequence    Send to blast
MTSDHRDAVF SLESPDLEEG GVGDGGESDT DEDLRETDDV VMPETNEAED DDPEEEDLNS  60
PSTSSLAMVS AVSTTAVVSG TPTASSTGTV TVALPAGSAV PVSVIPVDSD PKWHRMTEIV  120
HQRPPIDDSR RLFQRLWTDE DEIELLRGFL DYITTHRGSS SHPPDTAPFY EQIKSKLQLE  180
FNKNQLVEKL RRLKKKYRNV MSKISSGKEV FFKSPHDQST FEISRKIWNQ TGKIIGFEDN  240
NVMDFEETNH HGNSTNGNYS TFNSPGSNPA TAVDIDSENG VEKRLTMSGS SGSRKRSRSR  300
IGKIEEDNKP VISPSDGQLP NAASNVNLNE TATAVVGGNL GGLIEETVKN CVSPVIKEMM  360
NGTTSMMMAA MGGGFPGGAG GGAHGHGFGS LSPMFTRPLG YGVEGGGNKA VSDERWRKQQ  420
ILELEVYSRR LELVQEQIRA TLHELKTMPS VDPLCEIGEI NLAGISKALS MECSIKDDVT  480
QLIGNTPMVY LNNIVDGCVA RIAAKLEMME PCSSVKDRIA YGMIKDAEDK GLITPGKSIL  540
IEPTSGNTGI GIAMVGAARG YKVVITLPAS VSLERRIILL ALGAEVHLTD PSKGVMGVIV  600
KAEEILSKTP GGFIPEQFKN PSNPQSHYQT TGPEIWRDSA ERVDILVAGV GTGGTISGAG  660
KFLKEKNKDV KVYGMEPAES AVLSGGEPGP HLIQGIGAGI IPENLDFSVL DEVIQVTSVE  720
AIETAKLLAL KEGLLVGISS GAAAAAAIKV AKRPENAGKL IVVIFPSGGE RFNNFASSAS  780
TQIGDRKSFK TFKDPYSMEC SIKDDVTQLI GNTPMVYLNN IVDGCVARIA AKLEMMEPCS  840
SVKERIAYSM IKDAEDRGLI TPGKSTIIEP TSGNTGIGLA LVGAAKGYKV VLTLPDTMSL  900
ERKIVLLALG AEVHLTDTSK GVQGLFDKAN EILGKTPDGI ILQQFKNPAN PQAHYRTTGP  960
EIWRDSAGDV DILIAGVGTG GTISGSGKFL KEKNKDLKVY GVEPTESAVL SGGEPGPHLI  1020
QGIGAGIIPD NLDFSILDEV IQVTSVEAIE TARLLALKEG LLVGISSGAA AAAAIKVAKR  1080
PENAGKLIVV VFPSGGERYL STQLFDSVRV EAENMTFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1z7w_A1e-14047111181321Cysteine synthase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294299KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMap676733630
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3CMQ70.0A0A0D3CMQ7_BRAOL; Uncharacterized protein
STRINGBo5g146880.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.11e-175DNA-binding storekeeper protein-related transcriptional regulator