PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676732646
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB_related
Protein Properties Length: 655aa    MW: 75278.5 Da    PI: 8.9425
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676732646genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.8e-08599641444
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                      W++  +  lv+a k +++g   +W+++a  ++ g+t  qck ++
        676732646 599 WSAVQERALVQALKTFPNGtnqRWERVATAVP-GKTMSQCKKKF 641
                      ********************************.********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465653.14E-20167254IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.7E-19173275IPR001623DnaJ domain
SMARTSM002717.1E-15175250IPR001623DnaJ domain
PROSITE profilePS5007617.634176258IPR001623DnaJ domain
PfamPF002265.0E-17176255IPR001623DnaJ domain
CDDcd062576.99E-13176247IPR001623DnaJ domain
PRINTSPR006252.0E-7181199IPR001623DnaJ domain
PRINTSPR006252.0E-7199214IPR001623DnaJ domain
PRINTSPR006252.0E-7230250IPR001623DnaJ domain
PROSITE patternPS006360235254IPR018253DnaJ domain, conserved site
SMARTSM007176.9E-8595647IPR001005SANT/Myb domain
SuperFamilySSF466891.33E-8597650IPR009057Homeodomain-like
CDDcd001675.77E-6599645No hitNo description
Gene3DG3DSA:1.10.10.601.5E-4599646IPR009057Homeodomain-like
PROSITE profilePS500906.911599645IPR017877Myb-like domain
PfamPF002499.2E-7599641IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MATKSTGRGF IIDLHQFTNH KIEDNKPSSK ENSENKDVRK QTLPHQRLSW KLLRFVIQQE  60
ETLVLTFRLK SFIMQSWGIN SAIKLLTYSD ELSNGKPLYA SSNCLPLKAL NREPAGHAFH  120
AAALKLRGCA KEATDNKEDT SDKKVADEKD MEDIPSFDSY NNNNKGKKKS GKEQHDHYAL  180
LGLGNLRYLA TEDQIRKSYR EAALKHHPDK LATLLLAEET EEAKQAKKDA IESHFKLIQE  240
AYEVLMDPTK RRIFDSTDEF DDEVPRDCAP KDFFKVFGPA FKRNARWSVN PRVPDLGDEN  300
TPVEDVDRYY DFWYNFKSWR EFPEEEEHDL EQAESRDEKR WMERENAAKT KKARKEEYNR  360
IRTLVDNAYK KDPRILKRKE DKKAKKQQQK DAKVLAKKKL EEEENRRKEE ENRQKEEEAK  420
RAAEAALQQK RAKEKEKKLL QKERSRLRTL SAPVLSQRLL GISVGHVEDL CMSLKFEQLR  480
NLCDKMDKKE GLKLAKVLKN GNSSNDDETE SDDDESESKE VVQVAAKQNG HVEANGFSMV  540
DTATQKKEKP LSKEETKPLE NNNSTKSETT EQSSGKTEEN NNHDNSEPVA AAGSDPDGWS  600
AVQERALVQA LKTFPNGTNQ RWERVATAVP GKTMSQCKKK FTGLKDIIRT KKSTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A7e-1526537513123Zuotin
5dje_B7e-1526537513123Zuotin
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676732646
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399072.10.0dnaJ homolog subfamily C member 2
TrEMBLV4KRI40.0V4KRI4_EUTSA; Uncharacterized protein
STRINGXP_006399072.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06110.21e-158DnaJ domain ;Myb-like DNA-binding domain