PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bZIP

Protein Properties

Length: 458aa MW: 50873.2 Da PI: 7.1028

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676732482	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.3	1.1e-10	159	187	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka++++Le 676732482 159 KTLRRLAQNREAARKSRLRKKAYVQQLES 187 7789***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.1E-9	151	203	No hit	No description
SMART	SM00338	7.2E-7	155	243	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.737	157	201	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.01E-7	159	200	No hit	No description
CDD	cd14708	9.16E-23	159	211	No hit	No description
Pfam	PF00170	9.6E-8	159	189	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	162	177	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.8E-30	252	326	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MQGHHQNHHQ QLSSASATSS NGNFMNKDGY DLGEIDPSLF LYLDGQGHHD PPSTAPLPHH 60 HTTQNLAMRP PTSTLNIFPS QPMHIEPPPS SSTPNTDNTR LVPAVTPSGS TRPSSEPSMD 120 LTNHPQFQLP QPSKSIKKEG NRKGPASSDH DTPKSSDPKT LRRLAQNREA ARKSRLRKKA 180 YVQQLESCRI KLTQLEQEIQ RARSQGVFFG GSLIGGDQQQ GGLSIGPGNT SSEAAVFDME 240 YTRWLEEQQR LLTELRVATQ EHLAENELRM FVDTCLAHYD HLINLKAMVA KTDVFHLISG 300 AWKTPAERCF LWMGGFRPSE IIKVIVNQIE PLTEQQIVGI CGLQQSTQEA EEALSQGLEA 360 LNQSLSDSIV SDSLSPASAQ LPPHLSNFMS HMSLALNKLS ALEGFVLQAD NLRHQTIHRL 420 NQLLTTRQEA RCILAVAEYF HRLQALSSLW LARPRQDG

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MQGHHQNHHQ QLSSASATSS NGNFMNKDGY DLGEIDPSLF LYLDGQGHHD PPSTAPLPHH  60
HTTQNLAMRP PTSTLNIFPS QPMHIEPPPS SSTPNTDNTR LVPAVTPSGS TRPSSEPSMD  120
LTNHPQFQLP QPSKSIKKEG NRKGPASSDH DTPKSSDPKT LRRLAQNREA ARKSRLRKKA  180
YVQQLESCRI KLTQLEQEIQ RARSQGVFFG GSLIGGDQQQ GGLSIGPGNT SSEAAVFDME  240
YTRWLEEQQR LLTELRVATQ EHLAENELRM FVDTCLAHYD HLINLKAMVA KTDVFHLISG  300
AWKTPAERCF LWMGGFRPSE IIKVIVNQIE PLTEQQIVGI CGLQQSTQEA EEALSQGLEA  360
LNQSLSDSIV SDSLSPASAQ LPPHLSNFMS HMSLALNKLS ALEGFVLQAD NLRHQTIHRL  420
NQLLTTRQEA RCILAVAEYF HRLQALSSLW LARPRQDG

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA9, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00491	DAP	Transfer from AT5G06839	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676732482

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ132742	0.0	HQ132742.1 Arabidopsis thaliana bZIP65 (At5g06839) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006399160.2	0.0	transcription factor TGA10
Swissprot	E3VNM4	0.0	TGA10_ARATH; Transcription factor TGA10
TrEMBL	A0A1J3I3I6	0.0	A0A1J3I3I6_NOCCA; Transcription factor HBP-1b(C1)
STRING	Bo9g175780.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7207	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	0.0	bZIP family protein

Publications ? help Back to Top
Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]