PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676732454
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bZIP
Protein Properties Length: 330aa    MW: 36866.5 Da    PI: 9.3596
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676732454genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.57.9e-104686545
               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
               k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  676732454 46 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 86
               7789************************9877777766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.5E-742105IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4384488IPR004827Basic-leucine zipper domain
PfamPF001707.3E-74686IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.94E-74689No hitNo description
Gene3DG3DSA:1.20.5.1701.0E-74791No hitNo description
PROSITE patternPS0003604964IPR004827Basic-leucine zipper domain
PfamPF141442.0E-34128203IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MADRSPITDV STDGDTDHRD FGSEGALVNT AASDSSERSK EKLDQKTLRR LAQNREAARK  60
SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSTG DQAHSTGGNG ALAFDAEYSR  120
WHEEKNKQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK  180
TPAERCFLWL GGFRSSELLK LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ  240
SLADTLSSGT LGSSTSGNVA SYMGQMAMAM GKLGTLEGFI RQADNLRLQT LQQMIRVLTT  300
RQSARALLAI HDYFSRLRAL SSLWLARPRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00492DAPTransfer from AT5G06950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676732454
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531250.0AK353125.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-10-O14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399172.10.0transcription factor TGA2 isoform X1
RefseqXP_024011609.10.0transcription factor TGA2 isoform X1
SwissprotQ391400.0TGA6_ARATH; Transcription factor TGA6
TrEMBLE4MX780.0E4MX78_EUTHA; mRNA, clone: RTFL01-10-O14
TrEMBLV4KRR30.0V4KRR3_EUTSA; Uncharacterized protein
STRINGXP_006399172.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.20.0TGACG motif-binding factor 6