PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676731456
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 257aa    MW: 28147.5 Da    PI: 4.3232
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676731456genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.53.1e-052052411354
                HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                R+++++ +  Lr+++P       + ++ a++L +Av+Y+ksL
  676731456 205 RKKMKKMMGMLRKIVPGG-----EQMNTASVLDEAVQYLKSL 241
                899*************95.....68***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.398192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0049199247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-7205248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-8205251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGDGNMNVPY ASASSFDALF PPCAKLPYHG VELQPSAVCP KNFVIFDQTY DRSQVMYHPE  60
LTHRLVNSPS LNGLATTFQN EYVGESFGNY GQQESYGNYG QQESYGNYGQ QESYGNYGQP  120
EVSTSHQEDP NEIDALLSAD EDYEDDDDAD ENGGDSEEVS TARNSSREYG NTSAESCCSS  180
YGYKSSRSKQ SLSGSASCNN DGKGRKKMKK MMGMLRKIVP GGEQMNTASV LDEAVQYLKS  240
LKIEAQKLGV GNFSNQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203211GRKKMKKMM
Cis-element ? help Back to Top
SourceLink
PlantRegMap676731456
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532521e-144AK353252.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-23-J23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499513.21e-120PREDICTED: transcription factor bHLH144-like
SwissprotQ9ASX91e-111BH144_ARATH; Transcription factor bHLH144
TrEMBLR0GKS41e-113R0GKS4_9BRAS; Uncharacterized protein
STRINGXP_006303619.11e-113(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61951626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.29e-95bHLH family protein
Publications ? help Back to Top
  1. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]
  2. Cai Q, et al.
    The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis.
    Plant Cell Physiol., 2016. 57(8): p. 1583-92
    [PMID:27388339]
  3. Yamamoto M,Takahashi T
    Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis.
    Plant Signal Behav, 2017. 12(1): p. e1276685
    [PMID:28045577]